View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_48 (Length: 287)
Name: NF10957_low_48
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 35311557 - 35311814
Alignment:
| Q |
20 |
taactcctaaccaaatcatcttgagacccattattgaaaagaacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgt |
119 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35311557 |
taactcctaaccaaattatcttgagacccattattgaaaaggacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgt |
35311656 |
T |
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| Q |
120 |
caaaacttgttggagtgagagtatcaagtggtgctaaattggtgtcattatcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtc |
219 |
Q |
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| T |
35311657 |
caaaacttgttggagtgagagtatcaagtggtgctaaattggtgtcattgtcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtc |
35311756 |
T |
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| Q |
220 |
aatgttggtttcattgtatatgcgagttctgaacgatcggcactctccttggcctatg |
277 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
35311757 |
aatgttggtttcattgtatatgcgagttctgaacaatcgacactctccttggcctatg |
35311814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 35307214 - 35307468
Alignment:
| Q |
20 |
taactcctaaccaaatcatcttgagacccattattgaaaagaacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgt |
119 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| | |
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| T |
35307214 |
taactcctaaccaaattatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttat |
35307313 |
T |
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| Q |
120 |
caaaacttgttggagtgagagtatcaagtggtgctaaattggtgtcattatcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtc |
219 |
Q |
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| T |
35307314 |
caaaacttgttggagtgagagtatcaagtggtgctaaattggtgtc---accaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtc |
35307410 |
T |
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| Q |
220 |
aatgttggtttcattgtatatgcgagttctgaacgatcggcactctccttggcctatg |
277 |
Q |
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| T |
35307411 |
aatgttggtttcattgtatatgcgatttctgaaaaattggcactctccttggcctatg |
35307468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 35322215 - 35322469
Alignment:
| Q |
20 |
taactcctaaccaaatcatcttgagacccattattgaaaagaacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgt |
119 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
35322215 |
taactcctaaccaaattatcttgagacccattattgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaagatttttatagtaattgttgt |
35322314 |
T |
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| Q |
120 |
caaaacttgttggagtgagagtatcaagtggtgctaaattggtgtcattatcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtc |
219 |
Q |
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| T |
35322315 |
caaaatttgttggagtgagagtgtcaagaggtgctaaattggtgtc---accaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtc |
35322411 |
T |
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| Q |
220 |
aatgttggtttcattgtatatgcgagttctgaacgatcggcactctccttggcctatg |
277 |
Q |
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||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |
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| T |
35322412 |
aatgttggtttcattgtatatgcgatttctgaaaaattggcactctccttggcctatg |
35322469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 252
Target Start/End: Original strand, 35289448 - 35289645
Alignment:
| Q |
52 |
attgaaaagaacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggt |
151 |
Q |
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|||||||||| ||||||||||||| | || ||||| | |||||||||| ||||| ||||||||||||||| | ||||| || || |||||| ||| |
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| T |
35289448 |
attgaaaagagcttgatcagaatgaagaagtcctttattagcaacaaggtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggt |
35289547 |
T |
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| Q |
152 |
gctaaattggtgtcattatcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctga |
251 |
Q |
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| T |
35289548 |
gccaaatttatgtcac---caccagaagtaggacaatttgattttcttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctga |
35289644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 252
Target Start/End: Original strand, 35275336 - 35275533
Alignment:
| Q |
52 |
attgaaaagaacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggt |
151 |
Q |
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|||||||||||||||||||||||| | |||||||| | |||| ||||| |||||||||||||||||||| | |||||||||| || ||||| ||| |
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| T |
35275336 |
attgaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtcaaatttagttggagtgacagaatcaaagggt |
35275435 |
T |
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| Q |
152 |
gctaaattggtgtcattatcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctga |
251 |
Q |
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|||||||||||||| | ||| ||| || || || |||||||||||| || |||||| |||||||||||| |||||||| ||||||| |||||| |
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| T |
35275436 |
gctaaattggtgtc---accaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgttggcttcattgtgtatgcgatttctga |
35275532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 175 - 277
Target Start/End: Original strand, 35280223 - 35280325
Alignment:
| Q |
175 |
agaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctgaacgatcggcactctccttggcct |
274 |
Q |
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||||| || |||||| | ||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| ||| || | || ||| |||||||| |
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| T |
35280223 |
agaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaaattgacattctgcttggcct |
35280322 |
T |
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| Q |
275 |
atg |
277 |
Q |
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||| |
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| T |
35280323 |
atg |
35280325 |
T |
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