View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_50 (Length: 278)
Name: NF10957_low_50
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_50 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 36813461 - 36813184
Alignment:
| Q |
1 |
taacttcaattatgcatgcactagctttaagattccaagtgatttcgataatatatggccctagctttaagattaggaaaagaaaggcaccttactatat |
100 |
Q |
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| T |
36813461 |
taacttcaattatgcatgcactagctttaagattccaagtgatttcgataatatatggccctagctttaagattaggaaaagaaaggcaccttactatat |
36813362 |
T |
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| Q |
101 |
tcacatgtttcaaaaacattagtctctctgttgcacactgatcgtttagacttttaaatggcaaaatgtcaattcatgaacaagctagctcttagtcttt |
200 |
Q |
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| T |
36813361 |
tcacatgtttcaaaaacattagtctctttgttgcacactgatcgtttagacttttaaatggcaaaatgtcaattcatgaacaagctagctcttagtcttt |
36813262 |
T |
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| Q |
201 |
aaagcattttcaaaaataacccgagaaacctgtcgttgaatatttttccacgactccatgtcatcgatcattgtcgtt |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36813261 |
aaagcattttcaaaaataacccgagaaacctgtcgttgaatatttttccacgactccatgtcatcgatcattgtcgtt |
36813184 |
T |
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