View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_52 (Length: 273)
Name: NF10957_low_52
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 14487037 - 14487281
Alignment:
| Q |
13 |
ttgaaattattttaaaaacctcgaccaagttatttgatttgttgtacttatcttttttatgtttcgtactattccaaatggcactaaaacatatgaactc |
112 |
Q |
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| T |
14487037 |
ttgaaattattttaaaaacctcgaccaagttatttgatttgttgttcgtatcttttgtatgtttcgtactattccaaatggcactaaaacatatgaactc |
14487136 |
T |
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| Q |
113 |
attattgcaggttgacacaatttcctcaggaaggcttgtgatttagaagtaattctattgatttctaaatacttttcctttggttttattaacatcgatg |
212 |
Q |
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| T |
14487137 |
attattgcaggttgacacaatttcctcaggaaggcttgtgatttagaagtaattctattgatttctaaatacttttcctttggttttattaacatcgatg |
14487236 |
T |
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| Q |
213 |
ttccaagggaagattttatgtagtttctgttactgatgtacaatg |
257 |
Q |
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| T |
14487237 |
tttcaagggaagattttatgtagtttctgttactgatgtacaatg |
14487281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 257
Target Start/End: Complemental strand, 14167775 - 14167740
Alignment:
| Q |
222 |
aagattttatgtagtttctgttactgatgtacaatg |
257 |
Q |
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| T |
14167775 |
aagattttgtgtagtttctgttactgatgtacaatg |
14167740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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