View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10957_low_56 (Length: 264)
Name: NF10957_low_56
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_56 |
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| [»] scaffold0312 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 26 - 244
Target Start/End: Original strand, 942531 - 942749
Alignment:
| Q |
26 |
gagaagaacaatactattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattgg |
125 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
942531 |
gagaagaacaaaactattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattgg |
942630 |
T |
|
| Q |
126 |
aaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcacaatggaatcctaaacatttggcttttcatgtgcttaaagttca |
225 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
942631 |
aaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcagaatggaatcctaaacatttggctttttatgtgcttaaagttca |
942730 |
T |
|
| Q |
226 |
accagggactgttcctatt |
244 |
Q |
| |
|
||||||||||||||||||| |
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| T |
942731 |
accagggactgttcctatt |
942749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 26 - 244
Target Start/End: Original strand, 960492 - 960710
Alignment:
| Q |
26 |
gagaagaacaatactattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattgg |
125 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
960492 |
gagaagaacaaaactattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattgg |
960591 |
T |
|
| Q |
126 |
aaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcacaatggaatcctaaacatttggcttttcatgtgcttaaagttca |
225 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
960592 |
aaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcagaatggaatcctaaacatttggctttttatgtgcttaaagttca |
960691 |
T |
|
| Q |
226 |
accagggactgttcctatt |
244 |
Q |
| |
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||||||||||||||||||| |
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| T |
960692 |
accagggactgttcctatt |
960710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 26 - 244
Target Start/End: Original strand, 971801 - 972019
Alignment:
| Q |
26 |
gagaagaacaatactattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattgg |
125 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
971801 |
gagaagaacaaaactattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattgg |
971900 |
T |
|
| Q |
126 |
aaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcacaatggaatcctaaacatttggcttttcatgtgcttaaagttca |
225 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
971901 |
aaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcagaatggaatcctaaacatttggctttttatgtgcttaaagttca |
972000 |
T |
|
| Q |
226 |
accagggactgttcctatt |
244 |
Q |
| |
|
||||||||||||||||||| |
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| T |
972001 |
accagggactgttcctatt |
972019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 26 - 244
Target Start/End: Original strand, 949520 - 949738
Alignment:
| Q |
26 |
gagaagaacaatactattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattgg |
125 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
949520 |
gagaagaacaaaactattgtgtgtcacaaagagaattacccttacacagttttttactgtcataaaactgattcaaccgaagtttactctgtgcccttgg |
949619 |
T |
|
| Q |
126 |
aaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcacaatggaatcctaaacatttggcttttcatgtgcttaaagttca |
225 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||| |||||||| |
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| T |
949620 |
aaggtgttgatggaaacatggttaaaactattgttgtttgtcacactgatacatcagaatggaaccctaaacatttggcttttcaagtgctcaaagttca |
949719 |
T |
|
| Q |
226 |
accagggactgttcctatt |
244 |
Q |
| |
|
||||||||||||||||||| |
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| T |
949720 |
accagggactgttcctatt |
949738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 44 - 240
Target Start/End: Original strand, 936629 - 936825
Alignment:
| Q |
44 |
gtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattggaaggtgttgatggaaaca |
143 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| | |
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| T |
936629 |
gtgtgtcacaaagagagttacccttatgcagttttttactgtcataaaactgattcaactaaagtttactctgtgcctttggaaggtgttgatggaagta |
936728 |
T |
|
| Q |
144 |
tggttaaaactattgctgtttgtcacactgatacatcacaatggaatcctaaacatttggcttttcatgtgcttaaagttcaaccagggactgttcc |
240 |
Q |
| |
|
|||||| || ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| || |||||||| |
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| T |
936729 |
gagttaaagctgttgctgtgtgtcacactgatacttcacaatggaatcctaaacatttggcttttcaagtgctcaatgttcaacctggaactgttcc |
936825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 240
Target Start/End: Complemental strand, 419747 - 419533
Alignment:
| Q |
26 |
gagaagaacaatactattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattgg |
125 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| ||||| ||| |||||||||||| |||| |
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|
| T |
419747 |
gagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgttttactgtcacaaaacagatacaactaaagcttactctgtgcctttgg |
419648 |
T |
|
| Q |
126 |
aaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcacaatggaatcctaaacatttggcttttcatgtgcttaaagttca |
225 |
Q |
| |
|
| |||| |||||||| || |||||| |||||||||| |||||||||||||||||| ||||||| || ||||||||||| ||||| || || |||||||| |
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| T |
419647 |
agggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatcagaatggaacccaaaacatttggcatttcaagtactcaaagttca |
419548 |
T |
|
| Q |
226 |
accagggactgttcc |
240 |
Q |
| |
|
||| ||||||||||| |
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|
| T |
419547 |
acctgggactgttcc |
419533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 240
Target Start/End: Original strand, 975414 - 975628
Alignment:
| Q |
26 |
gagaagaacaatactattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattgg |
125 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| ||||| ||| |||||||||||| |||| |
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| T |
975414 |
gagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgttttactgtcacaaaacagatacaactaaagcttactctgtgcctttgg |
975513 |
T |
|
| Q |
126 |
aaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcacaatggaatcctaaacatttggcttttcatgtgcttaaagttca |
225 |
Q |
| |
|
| |||| |||||||| || |||||| |||||||||| |||||||||||||||||| ||||||| || ||||||||||| ||||| || || |||||||| |
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| T |
975514 |
agggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatcagaatggaacccaaaacatttggcatttcaagtactcaaagttca |
975613 |
T |
|
| Q |
226 |
accagggactgttcc |
240 |
Q |
| |
|
||| ||||||||||| |
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|
| T |
975614 |
acctgggactgttcc |
975628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 42 - 240
Target Start/End: Original strand, 909871 - 910069
Alignment:
| Q |
42 |
ttgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattggaaggtgttgatggaaa |
141 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||||| |||||||||| |||||||| |
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|
| T |
909871 |
ttgtgtgccacaaacggaattacccttatgcagttttttactgtcacaaaacagatgcaactaaagtttactctgtgcctttggaaggtgctgatggaag |
909970 |
T |
|
| Q |
142 |
catggttaaaactattgctgtttgtcacactgatacatcacaatggaatcctaaacatttggcttttcatgtgcttaaagttcaaccagggactgttcc |
240 |
Q |
| |
|
| |||||| || ||||| |||| ||| ||||||| |||||||||| | |||||||||||||||||| ||||| |||||||||| ||| ||| |||| |
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|
| T |
909971 |
tagagttaaagctgttgctatttgccactctgatacttcacaatggagccttaaacatttggcttttcaagtgctcaaagttcaacaaggaacttttcc |
910069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 99 - 240
Target Start/End: Original strand, 924461 - 924602
Alignment:
| Q |
99 |
caactgaagtttactctgtgccattggaaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcacaatggaatcctaaaca |
198 |
Q |
| |
|
||||| ||||||||| | |||| |||||||||||||||||| || |||||| || ||||| |||| ||| ||||||| |||||||||| ||||||||| |
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|
| T |
924461 |
caactaaagtttactatttgcctatggaaggtgttgatggaaccaaagttaaagctgttgctatttgccactctgatacttcacaatggagtcctaaaca |
924560 |
T |
|
| Q |
199 |
tttggcttttcatgtgcttaaagttcaaccagggactgttcc |
240 |
Q |
| |
|
|||||||||||| || || ||| ||||||| || |||||||| |
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|
| T |
924561 |
tttggcttttcaagtactcaaaattcaacctggaactgttcc |
924602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 99 - 240
Target Start/End: Original strand, 916410 - 916551
Alignment:
| Q |
99 |
caactgaagtttactctgtgccattggaaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcacaatggaatcctaaaca |
198 |
Q |
| |
|
||||| ||||||||| | |||| |||||||| ||||||| | || ||||||||| |||| |||| |||| |||||| |||||||||| ||| || || |
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|
| T |
916410 |
caactaaagtttactatttgcctatggaaggtattgatggtaccaaagttaaaactgctgctatttgccacaatgatacttcacaatggagtcccaagca |
916509 |
T |
|
| Q |
199 |
tttggcttttcatgtgcttaaagttcaaccagggactgttcc |
240 |
Q |
| |
|
||||||||||||||| || || |||||||| || |||||||| |
|
|
| T |
916510 |
tttggcttttcatgtactcaaggttcaacctggaactgttcc |
916551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 26 - 240
Target Start/End: Original strand, 10824 - 11038
Alignment:
| Q |
26 |
gagaagaacaatactattgtgtgtcacaaagagaattacccttatgcagttttttactgtcataaaactgattcaactgaagtttactctgtgccattgg |
125 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| ||||| ||| |||||||||||| |||| |
|
|
| T |
10824 |
gagaagaacaaagctgttgtgtgtcacaaagagaattacccttatgcagtgttttactgtcacaaaacagatacaactaaagcttactctgtgcctttgg |
10923 |
T |
|
| Q |
126 |
aaggtgttgatggaaacatggttaaaactattgctgtttgtcacactgatacatcacaatggaatcctaaacatttggcttttcatgtgcttaaagttca |
225 |
Q |
| |
|
| |||| |||||||| || |||||| |||||||||| |||||||||||||||||| ||||||| || ||||||||||| ||||| || || |||||||| |
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|
| T |
10924 |
agggtgctgatggaagcagagttaaagctattgctgtgtgtcacactgatacatcagaatggaacccaaaacatttggcatttcaagtactcaaagttca |
11023 |
T |
|
| Q |
226 |
accagggactgttcc |
240 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
11024 |
acctgggactgttcc |
11038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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