View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10957_low_59 (Length: 253)

Name: NF10957_low_59
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10957_low_59
NF10957_low_59
[»] chr7 (9 HSPs)
chr7 (51-253)||(7754122-7754325)
chr7 (91-211)||(38603001-38603122)
chr7 (91-163)||(19267369-19267441)
chr7 (108-212)||(30969763-30969868)
chr7 (95-211)||(37757468-37757585)
chr7 (95-211)||(37763216-37763333)
chr7 (90-163)||(34383352-34383426)
chr7 (113-161)||(28984151-28984199)
chr7 (95-163)||(29695175-29695243)
[»] chr6 (3 HSPs)
chr6 (91-214)||(14536112-14536236)
chr6 (94-214)||(14518617-14518736)
chr6 (94-165)||(7479007-7479082)
[»] chr1 (4 HSPs)
chr1 (91-214)||(51672453-51672576)
chr1 (91-163)||(8296173-8296245)
chr1 (113-194)||(18280457-18280539)
chr1 (95-162)||(36554247-36554311)
[»] chr3 (6 HSPs)
chr3 (91-159)||(41417140-41417208)
chr3 (134-213)||(26669181-26669261)
chr3 (95-165)||(8005056-8005127)
chr3 (91-162)||(44253034-44253104)
chr3 (91-144)||(47187649-47187702)
chr3 (133-240)||(49137563-49137671)
[»] chr5 (2 HSPs)
chr5 (95-212)||(18345696-18345814)
chr5 (106-214)||(11600902-11601010)
[»] chr4 (6 HSPs)
chr4 (92-222)||(29391157-29391284)
chr4 (91-163)||(23499438-23499510)
chr4 (91-214)||(8258825-8258948)
chr4 (91-214)||(8272243-8272366)
chr4 (94-162)||(9521880-9521948)
chr4 (118-162)||(36912767-36912811)
[»] chr2 (2 HSPs)
chr2 (91-140)||(1607790-1607839)
chr2 (91-163)||(3143241-3143313)
[»] chr8 (2 HSPs)
chr8 (92-140)||(7840408-7840455)
chr8 (107-163)||(39421523-39421579)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 51 - 253
Target Start/End: Complemental strand, 7754325 - 7754122
Alignment:
Q  51 agaggttttcaagttttataggcataatatatctaacaaaatcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacact 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7754325 agaggttttcaagttttataggcataatatatctaacaaaatcctctaaagtgagttaagtgtaaaatgagaaaatcaagggttgttattgtaacacact 7754226  T
Q  151 cgtgatttgtta-taagtatctacaatattaacatttaatttgttaattaacaattgatattgtctaccttacgctaaaaaatgatttgttcactataga 249  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  7754225 cgtgatttattattaagtatctacaatattaacatttaatttgttaattaacaattgatattgtccaccttacgctaaaaaatgatttgttcactttaga 7754126  T
Q  250 ggaa 253  Q
    ||||    
T  7754125 ggaa 7754122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 38603001 - 38603122
Alignment:
Q  91 atcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttataa-gtatctacaatattaacatttaat 189  Q
    |||||||||||||||| |||||||||   |||||||||||| |||||||| ||||| |||| ||||||||||||| ||| |||||||||  || ||| ||    
T  38603001 atcctctaaagtgagtgaagtgtaaagcaagaaaatcaagggttgttattttaacaaactcatgatttgttataatgtacctacaatatctacctttgat 38603100  T
Q  190 ttgttaattaacaattgatatt 211  Q
    || |||||||||  ||||||||    
T  38603101 tttttaattaacggttgatatt 38603122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 19267441 - 19267369
Alignment:
Q  91 atcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttat 163  Q
    |||||||||||||||| ||||||||| |||||||||||||| |||||||| ||||| |||| |||||||||||    
T  19267441 atcctctaaagtgagtaaagtgtaaattgagaaaatcaagggttgttattttaacaaactcatgatttgttat 19267369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 212
Target Start/End: Original strand, 30969763 - 30969868
Alignment:
Q  108 aagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttat-aagtatctacaatattaacatttaatttgttaattaacaattg 206  Q
    ||||||||| |||||||||||||| |||||||||||||| |||| ||||||||||| |  || |||||| || |||  |||||||||||||||||  |||    
T  30969763 aagtgtaaagtgagaaaatcaagggttgttattgtaacaaactcatgatttgttatgatatacctacaaaatcaacccttaatttgttaattaacggttg 30969862  T
Q  207 atattg 212  Q
    ||||||    
T  30969863 atattg 30969868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 211
Target Start/End: Complemental strand, 37757585 - 37757468
Alignment:
Q  95 tctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttataa-gtatctacaatattaacatttaatttgt 193  Q
    |||||||| ||| |||||||||  ||||||||||| | |||||||| ||||| |||| ||| ||||||||| ||| |||||||||  || ||| |||| |    
T  37757585 tctaaagttagtgaagtgtaaagcgagaaaatcaaaggttgttattttaacaaactcatgacttgttataatgtacctacaatatctacctttgattttt 37757486  T
Q  194 taattaacaattgatatt 211  Q
    |||||||| |||||||||    
T  37757485 taattaacgattgatatt 37757468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 211
Target Start/End: Complemental strand, 37763333 - 37763216
Alignment:
Q  95 tctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttataa-gtatctacaatattaacatttaatttgt 193  Q
    |||||||| ||| |||||||||  ||||||||||| | |||||||| ||||| |||| ||| ||||||||| ||| |||||||||  || ||| |||| |    
T  37763333 tctaaagttagtgaagtgtaaagcgagaaaatcaaaggttgttattttaacaaactcatgacttgttataatgtacctacaatatctacctttgattttt 37763234  T
Q  194 taattaacaattgatatt 211  Q
    |||||||| |||||||||    
T  37763233 taattaacgattgatatt 37763216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 34383426 - 34383352
Alignment:
Q  90 aatcctctaaagtgagttaagtgtaaaatgagaaaa-tcaaggattgttattgtaacacactcgtgatttgttat 163  Q
    ||||||||||| ||| | |||| ||||||||||||| ||||  ||||| ||||||||| |||| |||||||||||    
T  34383426 aatcctctaaattgaataaagtttaaaatgagaaaaatcaaatattgtcattgtaacaaactcatgatttgttat 34383352  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 28984151 - 28984199
Alignment:
Q  113 taaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgtt 161  Q
    |||| |||||||||||||| || ||||| ||||| ||||||||||||||    
T  28984151 taaagtgagaaaatcaagggttattattataacaaactcgtgatttgtt 28984199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 163
Target Start/End: Original strand, 29695175 - 29695243
Alignment:
Q  95 tctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttat 163  Q
    |||||||||| | || |||||||||  ||||| ||| ||||||||| ||||| |||| |||||||||||    
T  29695175 tctaaagtgaataaaatgtaaaatgtaaaaattaagaattgttattataacaaactcatgatttgttat 29695243  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 214
Target Start/End: Original strand, 14536112 - 14536236
Alignment:
Q  91 atcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttat-aagtatctacaatattaacatttaat 189  Q
    ||||||||||| |||| ||||||||| |||||||||||| | ||||||||| |||| |||||||||||||||| | ||| |||||||||  || ||||||    
T  14536112 atcctctaaagcgagtgaagtgtaaagtgagaaaatcaaaggttgttattgcaacaaactcgtgatttgttatgatgtacctacaatatctacctttaat 14536211  T
Q  190 ttgttaattaacaattgatattgtc 214  Q
    || ||||||||||||| ||||||||    
T  14536212 tttttaattaacaattaatattgtc 14536236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 94 - 214
Target Start/End: Original strand, 14518617 - 14518736
Alignment:
Q  94 ctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttat-aagtatctacaatattaacatttaatttg 192  Q
    ||||||||||| | ||||||||| ||||||||||||| ||||||||| ||| | |||| ||||||||||| | ||| |||||||||   | ||||||||     
T  14518617 ctctaaagtgaataaagtgtaaagtgagaaaatcaagaattgttattataagaaactcatgatttgttatgatgtacctacaatat--ccctttaatttt 14518714  T
Q  193 ttaattaacaattgatattgtc 214  Q
    | |||||||| |||||||||||    
T  14518715 taaattaacagttgatattgtc 14518736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 7479082 - 7479007
Alignment:
Q  94 ctctaaagtgagttaagtgtaaaatgagaaaatcaagga----ttgttattgtaacacactcgtgatttgttataa 165  Q
    ||||||||||| | ||||||||| ||||||||||||| |    |||||||| ||||| ||||||||||||||||||    
T  7479082 ctctaaagtgaataaagtgtaaagtgagaaaatcaagcaagagttgttattttaacaaactcgtgatttgttataa 7479007  T

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Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 91 - 214
Target Start/End: Original strand, 51672453 - 51672576
Alignment:
Q  91 atcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttat-aagtatctacaatattaacatttaat 189  Q
    |||||||||||||||||||||||||  |||||||||||| | ||||||||||| || |||| ||||||||||| | |||||| ||||||  || ||||||    
T  51672453 atcctctaaagtgagttaagtgtaacgtgagaaaatcaaaggttgttattgtatcaaactcatgatttgttatgatgtatctgcaatatctac-tttaat 51672551  T
Q  190 ttgttaattaacaattgatattgtc 214  Q
    ||||||||||||  |||||||||||    
T  51672552 ttgttaattaacggttgatattgtc 51672576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 163
Target Start/End: Original strand, 8296173 - 8296245
Alignment:
Q  91 atcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttat 163  Q
    ||||||||||||||||||| | |||| |||||||||||||| ||||||||||||| || || |||||||||||    
T  8296173 atcctctaaagtgagttaattataaagtgagaaaatcaagggttgttattgtaactcattcatgatttgttat 8296245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 18280539 - 18280457
Alignment:
Q  113 taaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttat-aagtatctacaatattaacatttaatttgtt 194  Q
    |||| |||||||||||||| |||||||||||||| | |  ||||||||||| | |||  ||||||||| || |||||||||||    
T  18280539 taaagtgagaaaatcaagggttgttattgtaacatatttatgatttgttatgatgtacttacaatatttacctttaatttgtt 18280457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 36554311 - 36554247
Alignment:
Q  95 tctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgtta 162  Q
    ||||||||||||| ||| |||||||| |||||||   ||||||||||||||| | || ||||||||||    
T  36554311 tctaaagtgagttgagtataaaatgaaaaaatca---attgttattgtaacaaattcatgatttgtta 36554247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 91 - 159
Target Start/End: Original strand, 41417140 - 41417208
Alignment:
Q  91 atcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttg 159  Q
    ||||||||||| |||  ||||||||| | |||||||||||| |||||||||||||| ||||||||||||    
T  41417140 atcctctaaagcgagaaaagtgtaaagtaagaaaatcaagggttgttattgtaacaaactcgtgatttg 41417208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 26669181 - 26669261
Alignment:
Q  134 tgttattgtaacacactcgtgatttgttataa-gtatctacaatattaacatttaatttgttaattaacaattgatattgt 213  Q
    ||||||||||||| |||| |||||| |||| | |||| |||||| || ||  ||||||| |||||||||||||||||||||    
T  26669181 tgttattgtaacaaactcatgatttattatgatgtatatacaattttcactcttaatttattaattaacaattgatattgt 26669261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 8005127 - 8005056
Alignment:
Q  95 tctaaagtgagttaagtgtaaaatgagaaaa-tcaaggattgttattgtaacacactcgtgatttgttataa 165  Q
    |||||||||||| ||| |||||||| ||||| | |||| |||||||||||||| | || |||||||||||||    
T  8005127 tctaaagtgagtaaagcgtaaaatgtgaaaaattaagggttgttattgtaacaaattcatgatttgttataa 8005056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 44253104 - 44253034
Alignment:
Q  91 atcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgtta 162  Q
    |||||||||||||| | ||||||||| ||| |||||||||| | |||||| ||||| |||||| ||||||||    
T  44253104 atcctctaaagtgactgaagtgtaaagtga-aaaatcaagggtggttattttaacaaactcgtaatttgtta 44253034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 91 - 144
Target Start/End: Original strand, 47187649 - 47187702
Alignment:
Q  91 atcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaa 144  Q
    ||||||||||| |||| ||||||||| ||||||||| |||  ||||||||||||    
T  47187649 atcctctaaagcgagtaaagtgtaaagtgagaaaattaagagttgttattgtaa 47187702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 240
Target Start/End: Complemental strand, 49137671 - 49137563
Alignment:
Q  133 ttgttattgtaacacactcgtgatttgttataa-gtatctacaatattaacatttaatttgttaattaacaattgatattgtctaccttacgctaaaaaa 231  Q
    |||||||| ||| | |||||||||||| ||||| | | |||||||||| |   |||||||||||||||| | |||||||| || || | |||||| ||||    
T  49137671 ttgttattttaataaactcgtgatttgctataatgcacctacaatatttattattaatttgttaattaatagttgatattatccacttgacgctataaaa 49137572  T
Q  232 tgatttgtt 240  Q
    ||| |||||    
T  49137571 tgaattgtt 49137563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 212
Target Start/End: Original strand, 18345696 - 18345814
Alignment:
Q  95 tctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttat-aagtatctacaatattaacatttaatttgt 193  Q
    |||||||||||| |||| |||| |  ||||||||||| ||||||||| |||| |||| ||||||||||| | ||| |||||||||  || ||| |||| |    
T  18345696 tctaaagtgagtaaagtataaagtacgaaaatcaagggttgttattgcaacaaactcatgatttgttatgacgtacctacaatatatacttttcatttat 18345795  T
Q  194 taattaacaattgatattg 212  Q
    ||||||||  |||||||||    
T  18345796 taattaacggttgatattg 18345814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 214
Target Start/End: Original strand, 11600902 - 11601010
Alignment:
Q  106 ttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttataa-gtatctacaatattaacatttaatttgttaattaacaat 204  Q
    ||||||||||| ||||||||| || | ||||||| | |||| |||||| |  |||||  | |||| ||||||||  ||||||||| ||||||||||| ||    
T  11600902 ttaagtgtaaagtgagaaaattaacggttgttat-gcaacaaactcgtaacctgttacgatgtatttacaatatatacatttaatatgttaattaacgat 11601000  T
Q  205 tgatattgtc 214  Q
    ||||||||||    
T  11601001 tgatattgtc 11601010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 222
Target Start/End: Original strand, 29391157 - 29391284
Alignment:
Q  92 tcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttataagtatctacaatattaacatttaattt 191  Q
    ||||||||||||||| ||||||||| | |||||||  ||| |||||||||||||| |||| | | || | ||  ||| |||||||||   | ||||||||    
T  29391157 tcctctaaagtgagtaaagtgtaaagtaagaaaattgagggttgttattgtaacaaactcat-aattatgat--gtacctacaatatatgcctttaattt 29391253  T
Q  192 gttaattaacaattgatattgtctaccttac 222  Q
    ||||||||||| ||||||||| |||| ||||    
T  29391254 gttaattaacagttgatattgcctactttac 29391284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 23499510 - 23499438
Alignment:
Q  91 atcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttat 163  Q
    ||||| |||||||  | ||||||||| ||||||||| |||| |||||||| ||||| |||| |||||||||||    
T  23499510 atcctttaaagtggctgaagtgtaaagtgagaaaattaagggttgttattttaacaaactcatgatttgttat 23499438  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 214
Target Start/End: Original strand, 8258825 - 8258948
Alignment:
Q  91 atcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttataagtat--ctacaatattaacatttaa 188  Q
    |||||||||||||  | ||| ||||||||||||| |||| | ||||||||||||||  ||| | |||| |||  | |||  |||||||||  ||||||||    
T  8258825 atcctctaaagtggataaagggtaaaatgagaaa-tcaaaggttgttattgtaacaagctcataattttttacga-tatgcctacaatatctacatttaa 8258922  T
Q  189 tttgttaattaacaattgatattgtc 214  Q
    |||||||||| |||||| ||||||||    
T  8258923 tttgttaattgacaatttatattgtc 8258948  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 214
Target Start/End: Original strand, 8272243 - 8272366
Alignment:
Q  91 atcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttataagtat--ctacaatattaacatttaa 188  Q
    |||||||||||||  | ||| ||||||||||||| |||| | ||||||||||||||  ||| | |||| |||  | |||  |||||||||  ||||||||    
T  8272243 atcctctaaagtggataaagggtaaaatgagaaa-tcaaaggttgttattgtaacaagctcataattttttacga-tatgcctacaatatctacatttaa 8272340  T
Q  189 tttgttaattaacaattgatattgtc 214  Q
    |||||||||| |||||| ||||||||    
T  8272341 tttgttaattgacaatttatattgtc 8272366  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 9521948 - 9521880
Alignment:
Q  94 ctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgtta 162  Q
    ||||||||||| | ||||||||| |||||||||||| | |||| | | ||||| |||| ||||||||||    
T  9521948 ctctaaagtgactaaagtgtaaagtgagaaaatcaaaggttgtcaatttaacaaactcatgatttgtta 9521880  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 36912767 - 36912811
Alignment:
Q  118 tgagaaaatcaaggattgttattgtaacacactcgtgatttgtta 162  Q
    |||||||||||| ||||||||| |||||| |||| ||||||||||    
T  36912767 tgagaaaatcaaagattgttatcgtaacaaactcatgatttgtta 36912811  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 140
Target Start/End: Original strand, 1607790 - 1607839
Alignment:
Q  91 atcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttatt 140  Q
    |||||||||||||||| ||| ||||||||||||| |||| ||||||||||    
T  1607790 atcctctaaagtgagtaaagggtaaaatgagaaattcaatgattgttatt 1607839  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 163
Target Start/End: Complemental strand, 3143313 - 3143241
Alignment:
Q  91 atcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttat 163  Q
    |||||||||||||| | |  |||||| |||||| ||||||  |||||||| ||||| |||| |||||||||||    
T  3143313 atcctctaaagtgactaatttgtaaagtgagaatatcaagtgttgttattttaacaaactcctgatttgttat 3143241  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 7840455 - 7840408
Alignment:
Q  92 tcctctaaagtgagttaagtgtaaaatgagaaaatcaaggattgttatt 140  Q
    ||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  7840455 tcctctaaagtgagttaagtgtaaagt-agaaaatcaagggttgttatt 7840408  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 39421523 - 39421579
Alignment:
Q  107 taagtgtaaaatgagaaaatcaaggattgttattgtaacacactcgtgatttgttat 163  Q
    |||||||||| |||||||||||| | |||||||| ||||| |||| |||||||||||    
T  39421523 taagtgtaaagtgagaaaatcaaaggttgttattttaacaaactcatgatttgttat 39421579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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