View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_6 (Length: 791)
Name: NF10957_low_6
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 471
Target Start/End: Complemental strand, 42412085 - 42411631
Alignment:
| Q |
17 |
caaatattgttcctacttgtttttccagtccacctccaatgcaatctcattacggcgttgaaatggaagagcaaatgggggattatactgaaacaaaata |
116 |
Q |
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| T |
42412085 |
caaatattgttcctacttgtttttccactccacctccaatgcaatctcattacggcgttgaaatggaagagcaaatgggggattatactgaaacaaaata |
42411986 |
T |
|
| Q |
117 |
aaagattaactaccatttgaagaagaaagggattgatgagaaagctttataaatgtttaaccccaagattgcgttaaggatttaacctgtgcaatttcta |
216 |
Q |
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| T |
42411985 |
aaagattaactaccatttgaagaagaaagggattgatgagaaagctttataaatgtttaaccccaagattgcgttaaggatttaacctgtgcaatttcta |
42411886 |
T |
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| Q |
217 |
ttgaagttccctctttaattttgaactgtccgtcatttttcaaagcttctcttagtttcagttcacgcctcttaacttcttcatcattcacaaaacctga |
316 |
Q |
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| T |
42411885 |
ttgaagttccctctttaattttgaactgtccgtcatttttcaaagcttctcttagtttcagttcacgcctcttaacttcttcatcattcacaaaacctga |
42411786 |
T |
|
| Q |
317 |
ttcaatacaaaggaaagaaaaatacatatttgatttagaactttaaatgaaatttaagtaaataattaatccacttataaacaaatatttagaggtgcca |
416 |
Q |
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| T |
42411785 |
ttcaatacaaaggaaagaaaaatacatatttgatttagaactttaaatgaaatttaagtaaataattaatccacttataaacaaatatttagaggtgcca |
42411686 |
T |
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| Q |
417 |
gatttactcatttataacttgtgatttgcaaaacaatgagccccaccagtgcacc |
471 |
Q |
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| T |
42411685 |
gatttactcatttataacttgtgatttgcaaaacaatgagccccaccagtgcacc |
42411631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 545 - 778
Target Start/End: Complemental strand, 42411577 - 42411344
Alignment:
| Q |
545 |
gaaagacccggtgaatcatgtgggattacatatacatacataaatacaaagaaataattggataaaattcatgcggggctcactgaatcatgcaggtctc |
644 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42411577 |
gaaagacccggtgaatcatgtgggattacatatacatacataaatacaaagaaataattggataaaattcatgtggggctcactgaatcatgcaggtctc |
42411478 |
T |
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| Q |
645 |
atttcctatttggaggttcccacatgaattgcactcaataatagagacaatgttgaaaaaatctgttgctaacacctctctacttacaaatatacatatg |
744 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
42411477 |
atttcctatttggaggttcccacatgaattacactcaataatagagacaatgttgaaaaaatctgttgctaacacctctctacgtacaaatatacaaatg |
42411378 |
T |
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| Q |
745 |
aatggaatgagctaaattgtgtgttatctgtgct |
778 |
Q |
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|||||||| ||||||||||||||||||||||||| |
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| T |
42411377 |
aatggaataagctaaattgtgtgttatctgtgct |
42411344 |
T |
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