View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_60 (Length: 253)
Name: NF10957_low_60
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_60 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 43195617 - 43195358
Alignment:
| Q |
1 |
acataactaagaagcaaatagaaaagcttaacccctttttataaattaaaatcacaaacgtacttgtagatcatgaaaccaatctcctttcttacaattt |
100 |
Q |
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| T |
43195617 |
acataactaagaagcaaatagaaaagcttaacccctttttataaattaaaatcacaaacgtacttgtagatcatgaaaccaatctcctttcttacaattt |
43195518 |
T |
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| Q |
101 |
tgtaaatgaaacnnnnnnnn----cacaataaaagtaagacagtacaca--tacacaaccctccaaagcacacaaaatcaaatagacaatgaaaacatgt |
194 |
Q |
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| T |
43195517 |
tgtaaatgaaacaaaaaaaaaaaacacaataaaagtaagacagtacacacttacacaaccctccaaagcacacaaaatcaaatagacaatgaaaacatgt |
43195418 |
T |
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| Q |
195 |
ttaac-aacttattatgcgcacaacacacatgtatataacacaattttgttgtatgtgta |
253 |
Q |
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| T |
43195417 |
ttaacaaacttattatgcgcacaacacacatgtatataacacaattttgttgtatgtgta |
43195358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 43181234 - 43181157
Alignment:
| Q |
33 |
ccctttttataaattaaaatcacaaacgtacttgtagatcatgaaaccaatctcctttcttacaattttgtaaatgaa |
110 |
Q |
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| T |
43181234 |
ccctttttataaattaaaatcacaattgaccttgtagattatcaaactagcttccgttcttacaattttgtaaatgaa |
43181157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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