View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10957_low_63 (Length: 250)
Name: NF10957_low_63
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_63 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 35985491 - 35985251
Alignment:
| Q |
1 |
gcattgcataccaaggcaacgaagattatactaattaccttcaataaatcggtcaacttgagtgacgttaagcaactttttggtaacttgattatggcag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35985491 |
gcattgcataccaaggcaacgaagattagactaattaccttcaataaatcggtcaacttgagtgacgttaagcaactttttggtaacttgattatggcag |
35985392 |
T |
|
| Q |
101 |
gtttctttggatgaaaatcatatggaaaatattctgaaggatatctccaccattcaaccgctcttaaactatttggaagatgtttgggtcctttggaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35985391 |
gtttctttggatgaaaatcatatggcaaatattctgaaggatatctccaccattcaaccgctcttaaactatttggaagatgtttgggtcctttggaaaa |
35985292 |
T |
|
| Q |
201 |
atggccacctctgattgtaagagtttttaggtttttcatct |
241 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
35985291 |
atggccacctttgattgtaagagtttttagggttttcatct |
35985251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 35 - 239
Target Start/End: Complemental strand, 31907138 - 31906934
Alignment:
| Q |
35 |
ttaccttcaataaatcggtcaacttgagtgacgttaagcaactttttggtaacttgattatggcaggtttctttggatgaaaatcatatggaaaatattc |
134 |
Q |
| |
|
||||||||| ||| || ||||||||||||||| |||||| |||||||||||||| || ||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
31907138 |
ttaccttcattaagtcagtcaacttgagtgacattaagctactttttggtaactcgaatatggcaagtttctttggattaaaatcatatggaaaatattc |
31907039 |
T |
|
| Q |
135 |
tgaaggatatctccaccattcaaccgctcttaaactatttggaagatgtttgggtcctttggaaaaatggccacctctgattgtaagagtttttaggttt |
234 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||||| |
|
|
| T |
31907038 |
tgaaggataattccaccattccactactcttaaactatttggaagatgtttgggtcctttggagaaatggccacctttgataataagtgtttttaggttt |
31906939 |
T |
|
| Q |
235 |
ttcat |
239 |
Q |
| |
|
||||| |
|
|
| T |
31906938 |
ttcat |
31906934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 193
Target Start/End: Original strand, 16371167 - 16371288
Alignment:
| Q |
72 |
gcaactttttggtaacttgattatggcaggtttctttggatgaaaatcatatggaaaatattctgaaggatatctccaccattcaaccgctcttaaacta |
171 |
Q |
| |
|
|||||||| |||||||||| |||||| ||||||||||||||||||||| ||| || || ||||||||| | ||||||||| | | ||||||||||| |
|
|
| T |
16371167 |
gcaactttcaggtaacttgagcatggcaagtttctttggatgaaaatcatttggtaatgatggtgaaggatacccccaccattccaacactcttaaacta |
16371266 |
T |
|
| Q |
172 |
tttggaagatgtttgggtcctt |
193 |
Q |
| |
|
|| ||||||||| |||| |||| |
|
|
| T |
16371267 |
ttgggaagatgtgtggggcctt |
16371288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 16693128 - 16693063
Alignment:
| Q |
135 |
tgaaggatatctccaccattcaaccgctcttaaactatttggaagatgtttgggtcctttggaaaa |
200 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
16693128 |
tgaaggatatctatgccattcaagcactcttaaactatttggaagatgttttggtcctttggaaaa |
16693063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University