View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_65 (Length: 250)
Name: NF10957_low_65
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 48365956 - 48365718
Alignment:
| Q |
1 |
aaagcaacaagagttgttccaaatttgtgataaaacttttcagtagcttacctcgttattttttccttcaatgctccaattttttctgctggtgtcgtaa |
100 |
Q |
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| T |
48365956 |
aaagcaacaagagttgttccaaatttgtgataaaacttttcagtagcttacctcgttattttttctttcaatgctccaattttctctgctggtgtcgtaa |
48365857 |
T |
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| Q |
101 |
aatcaaccgagaactctataccttcagccatatttgggcttctgtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttc |
200 |
Q |
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| T |
48365856 |
aatcaaccgagaactctataccttcagccatatttgggcttctgtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttc |
48365757 |
T |
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| Q |
201 |
attattaagcttcaagaatactgttgtcaatatattcat |
239 |
Q |
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| T |
48365756 |
attattaagcttcaagaatactgttgtcaatatattcat |
48365718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 48385494 - 48385258
Alignment:
| Q |
4 |
gcaacaagagttgttccaaatttgtgataaaacttttcagtagcttacctcgttattttttccttcaatgctccaattttttctgctggtgtcgtaaaat |
103 |
Q |
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| T |
48385494 |
gcaataagacttgttccaaattgaggataaaactc--cactagcttacctcttcactttttctttcagtgccccaattttctctgctggtgtcgtaaaat |
48385397 |
T |
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| Q |
104 |
caaccgagaactctataccttcagccatatttgggcttctgtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttcatt |
203 |
Q |
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| T |
48385396 |
caaccgagaactctaccttttcaaccatatttgggcttctgtaataattgctaatcggtttagaggcgaggacagagtttggataatacaacttttcatt |
48385297 |
T |
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| Q |
204 |
attaagcttcaagaatactgttgtcaatatattcatctc |
242 |
Q |
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| T |
48385296 |
attaagcttcaagaatactgttgtcaatatattcatctc |
48385258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 44 - 239
Target Start/End: Original strand, 48396656 - 48396851
Alignment:
| Q |
44 |
tagcttacctcgttattttttccttcaatgctccaattttttctgctggtgtcgtaaaatcaaccgagaactctataccttcagccatatttgggcttct |
143 |
Q |
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||||||||||| |||||||||| |||| || ||| ||||| ||||||| || ||||||||||| |||||||||| || ||| ||||||| |||||||| |
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| T |
48396656 |
tagcttacctctttattttttcattcagtgatccgattttctctgctgacgttgtaaaatcaactgagaactctacactgtcacccatattagggcttct |
48396755 |
T |
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| Q |
144 |
gtaataattgctaatcggtttagtggcgaggacagagtttggataatacaccttttcattattaagcttcaagaatactgttgtcaatatattcat |
239 |
Q |
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| T |
48396756 |
gtaataattgctgatcggttttatggctaggacagagtttggataatacaccttttcattattaagtttcaagaatactgttgtcagtatgttcat |
48396851 |
T |
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