View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_74 (Length: 242)
Name: NF10957_low_74
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_74 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 242
Target Start/End: Original strand, 44622854 - 44623082
Alignment:
| Q |
3 |
caaaggtgagacaaaaacaagagtttttctgaaagagcttatttggtatgctctttacactcnnnnnnnn--cttcctttgttatttctatttcaagttg |
100 |
Q |
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| T |
44622854 |
caaaggtgagacaaaaacaagagtttttctgaaagagcttatttggtatgctctttacacttttttttctttcttcctttgttatttctattt------- |
44622946 |
T |
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| Q |
101 |
tgatttcatgttagttagactatgttactaattactcacagctttactctattatctatatgcaaattttcttgtttcaatatgtaatagcatctataat |
200 |
Q |
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| T |
44622947 |
------catgttagttagactatgttactaattactcacagctttactctattatctatatgcaaattttcttgtttcaatatgtaatagcatctataat |
44623040 |
T |
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| Q |
201 |
taaacaatagtgcacaatcgaatttaaggatcactgtgtttt |
242 |
Q |
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| T |
44623041 |
taaacaatagtgcacaatcaaatttaaggatcactgtgtttt |
44623082 |
T |
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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 44952687 - 44952640
Alignment:
| Q |
8 |
gtgagacaaaaacaagagtttttctgaaagagcttatttggtatgctc |
55 |
Q |
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| T |
44952687 |
gtgagacaaaaagaagagtttttctgaaagagcttattaggtatgctc |
44952640 |
T |
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