View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_75 (Length: 241)
Name: NF10957_low_75
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_75 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 31821534 - 31821756
Alignment:
| Q |
19 |
gtgttacctcaagaagattgtgatttgtttacagggaaatgggttcttgataatgtgacacatcctttatacaaagaagaacaatgtgaatttcttactt |
118 |
Q |
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| T |
31821534 |
gtgttacctcaagaagattgtgatttgtttacagggaaatgggttcttgataatgtgacacatcctttatacaaagaagaacaatgtgaatttcttactt |
31821633 |
T |
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| Q |
119 |
cacaagttacatgcatgaagaatggaagaagtgattctttgtatcagaattggaggtggcagccaagagattgttctttaccgaagtaagcacattaaaa |
218 |
Q |
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| T |
31821634 |
cacaagttacatgcatgaagaatggaagaagtgattctttgtatcagaattggaggtggcagccaagagattgttctttaccgaagtaagcacattaaaa |
31821733 |
T |
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| Q |
219 |
ttctttacatttttcaaatttct |
241 |
Q |
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| T |
31821734 |
ttctttacatttttcaaatttct |
31821756 |
T |
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Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 35688453 - 35688616
Alignment:
| Q |
32 |
aagattgtgatttgtttacagggaaatgggttcttgataatgtgacacatcctttatacaaagaagaacaatgtgaatttcttacttcacaagttacatg |
131 |
Q |
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| T |
35688453 |
aagattgtgacttgttcaatggtaaatgggttttagataacgtgacacatcctttgtataaagaagatgaatgtgagtttctcacttctcaagttacatg |
35688552 |
T |
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| Q |
132 |
catgaagaatggaagaagtgattctttgtatcagaattggaggtggcagccaagagattgttct |
195 |
Q |
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| T |
35688553 |
tatgaggaatggaagacgtgattctttgtatcagaattggaaatggcagccaaaagactgttct |
35688616 |
T |
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