View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_76 (Length: 240)
Name: NF10957_low_76
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_76 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 5135205 - 5135427
Alignment:
| Q |
18 |
catggtagtcttggaagagagcaagctctctaaatattgattttccatcacgtttgaatccagctacatcaggattctttgctagccatgactctaatag |
117 |
Q |
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| T |
5135205 |
catggtagtcttggaagagagcaagctctctaaatattgattttccatcacgtttgaatccagctacatcaggattctttgctagccatgactctaatag |
5135304 |
T |
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| Q |
118 |
atcaaaagacagctgcaaataatgacaaaaatcttgttagcccacaaccttaattatttagacattatatgatggcttggtctagttagattgtgacaca |
217 |
Q |
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| T |
5135305 |
atcaaaagacagctgcaaataatgacaaaattcttgttagcccacaaccttaattatttagacattatatgatggcttggtctagttagattgtgacaca |
5135404 |
T |
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| Q |
218 |
aaaacacacacaatgaattactt |
240 |
Q |
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| T |
5135405 |
aaaacacacacaatgaattactt |
5135427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 38881071 - 38880964
Alignment:
| Q |
108 |
actctaatagatcaaaagacagctgcaaataatgacaaaaatcttgttagcccacaaccttaattatttagacattatatgatggcttggtctagttaga |
207 |
Q |
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|||| ||||||||||||||||||| |||||| ||||| || ||||||||| | ||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
38881071 |
actccaatagatcaaaagacagctacaaatagtgacagaagtcttgttagtctacaaccttaattattaatacattatatgatggcttggtctagttaga |
38880972 |
T |
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| Q |
208 |
ttgtgaca |
215 |
Q |
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| T |
38880971 |
ttgtgaca |
38880964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 38882260 - 38882167
Alignment:
| Q |
18 |
catggtagtcttggaagagagcaagctctctaaatattgattttccatcacgtttgaatccagctacatcaggattctttgctagccatgactc |
111 |
Q |
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|||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | || ||||| |||||||||||||| |
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| T |
38882260 |
catggtagtcttggaagagagcaagctctcgaaattttgattttccatcacgtttgaatccagctacacctgggttcttagctagccatgactc |
38882167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 40207380 - 40207262
Alignment:
| Q |
18 |
catggtagtcttggaagagagcaagctctctaaatattgattttccatcacgtttgaatccagctacatcaggattctttgctagccatgactctaatag |
117 |
Q |
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||||||||||||||||||||||||| || | ||||| ||||||||||| | ||||||||||| | |||| |||||||| ||||||||||| || || || |
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| T |
40207380 |
catggtagtcttggaagagagcaagttcacggaatatggattttccatctcttttgaatccagatgcatctggattcttagctagccatgattccaagag |
40207281 |
T |
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| Q |
118 |
atcaaaagacagctgcaaa |
136 |
Q |
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||||||||| ||||||||| |
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| T |
40207280 |
atcaaaagagagctgcaaa |
40207262 |
T |
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