View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10957_low_8 (Length: 770)
Name: NF10957_low_8
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 539; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 539; E-Value: 0
Query Start/End: Original strand, 3 - 607
Target Start/End: Complemental strand, 47759344 - 47758734
Alignment:
| Q |
3 |
tgaggaggagcagagagtgacgaaaaggaggttggaacgtgaaagagggagaagagaagctactgctgatatgtctgaggatttatctgaaggtgagaga |
102 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47759344 |
tgaggcggtgcagagagtgacgaaaaggaggttggaacgtgaaagagggagaagagaagctactgctgatatgtctgaggatttatctgaaggtgagaga |
47759245 |
T |
|
| Q |
103 |
ggagatccggtgagtgatgtttctgctcatggtggtgaatctacgaaagctagattaccgcgaatcagttctgctgatgctatggaaacttgggctatta |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47759244 |
ggagatccggtgagtgatgtttctgctcatggtggtgaatctacgaaagctagattgccgcgaatcagttctgctgatgctatggaaacttgggctatta |
47759145 |
T |
|
| Q |
203 |
atcataaaggcaagaagctctacattgttctcataaggtaaattcaatgcgaaagtggatcaaattatgttgatgaatgattgatgttattgtaattggt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47759144 |
atcataaaggcaagaagctctacattgttctcataaggtaaattcaatgcgaaagtggatcaaattatgttgatgaatgattgatgttattgtaattggt |
47759045 |
T |
|
| Q |
303 |
taatatg------nnnnnnngattctattgtgtggagctctgttttatctctagtgtgtgattttgttttgttattcttaaatttaataaggtgtttacg |
396 |
Q |
| |
|
||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47759044 |
taatatgttttattttattttattttattgtgtggatctctgttttatctctagtgtgtgattttgttttgttattcttaaatttaataaggtgtttacg |
47758945 |
T |
|
| Q |
397 |
tgcagtattcacggcctcatacgtggcgagaatatggagctggggcgtgattctgatacgggtggtcaggtagtacttttgttcaactgtatattgtttt |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47758944 |
tgcagtattcacggcctcatacgtggcgagaatatggagctggggcgtgattctgatacgggtggtcaggtagtacttttgttcaactgtatattgtttt |
47758845 |
T |
|
| Q |
497 |
tcttttccatgttaagaatctgttaaattttgtcattttctgattgcgcgatacggtactggctgtactcttaaatatgctgatatctagctgattgtgt |
596 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47758844 |
tcttttccatgttaagaatctgttaaattttgtcgttttctgattgcgcgatacggtactggctgtactcttaaatatgctgatatctagctgattgtgt |
47758745 |
T |
|
| Q |
597 |
gggggagctga |
607 |
Q |
| |
|
||||||||||| |
|
|
| T |
47758744 |
gggggagctga |
47758734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 635 - 751
Target Start/End: Complemental strand, 47758708 - 47758592
Alignment:
| Q |
635 |
gtgctgagtaggttaagtatgttgtggagcttgcgcgagccttgggatcaatgccgggagtttatcgggttgatttgctaactaggcaagtcgcatcgcc |
734 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47758708 |
gtgctgagtaggttaagtatgttgtggagcttgcgcgagccttgggatcaatgccgggagtttatcgggttgatttgctaactaggcaagtcgcatcgcc |
47758609 |
T |
|
| Q |
735 |
agatgtagattggagtt |
751 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
47758608 |
agatgtagattggagtt |
47758592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 63
Target Start/End: Complemental strand, 45399238 - 45399191
Alignment:
| Q |
16 |
agagtgacgaaaaggaggttggaacgtgaaagagggagaagagaagct |
63 |
Q |
| |
|
|||||||| ||| |||||||||| | |||||||||||||||||||||| |
|
|
| T |
45399238 |
agagtgacaaaacggaggttggaccatgaaagagggagaagagaagct |
45399191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University