View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_81 (Length: 236)
Name: NF10957_low_81
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 3947568 - 3947365
Alignment:
| Q |
17 |
aaggggatggacatataccaaccaaacatcctctatgaatattgtatcaaaataacacatttgttcttcacaggtgtagaatcatttgacattgatatga |
116 |
Q |
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| T |
3947568 |
aaggggatggacatataccaaccaaacatcctctatgaatattgtatcaaaataacacatttgttcttcacaggtgtagaatcatttgacattgatatga |
3947469 |
T |
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| Q |
117 |
aggaacaaaaagtgactgtgaaaggaaatgtaaagccacaagatgttttttgacactgtttccaaaactggaaagaaaactgaattctgggtagaacctg |
216 |
Q |
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| T |
3947468 |
aggaacaaaaagtgactgtgaaaggaaatgtaaagccacaagatgt-ttttgacactgtttccaaaactggaaagaaaactgaattctgggtagaacctg |
3947370 |
T |
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| Q |
217 |
aaaac |
221 |
Q |
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||||| |
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| T |
3947369 |
aaaac |
3947365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 18602791 - 18602683
Alignment:
| Q |
55 |
atattgtatcaaaataacacatttgttcttcacaggtgtagaatcatttgacattgatatgaaggaacaaaaagtgactgtgaaaggaaatgtaaagcca |
154 |
Q |
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||||||||||||||||||| ||| || | |||||||| ||||| |||||||||||||| |||||||||| |||||||| |||||||||||||| ||| |
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| T |
18602791 |
atattgtatcaaaataacagttttactcattgcaggtgtataatcagttgacattgatatggaggaacaaaaggtgactgttaaaggaaatgtaaaccca |
18602692 |
T |
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| Q |
155 |
caagatgtt |
163 |
Q |
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| T |
18602691 |
caagatgtt |
18602683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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