View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10957_low_9 (Length: 709)
Name: NF10957_low_9
Description: NF10957
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10957_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 20 - 691
Target Start/End: Original strand, 3308632 - 3309308
Alignment:
| Q |
20 |
gaaggctagtgcttaacgtgcgtgatagtgtggaagggttgaaagcttcagtgtcaaggcaatgaaacgatgccgtattagtggagaatgttattgcttg |
119 |
Q |
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|||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308632 |
gaaggccagtgcttaacgtgtgtcatagtgtggaagggttgaaagcttcagtgtcaaggcaatgaaacgatgccgtattagtggagaatgttattgcttg |
3308731 |
T |
|
| Q |
120 |
gaaaaggagagagaatatgaactttctaggtgtatcaaagtagaaaagcaaagttgtaaagcatggattccaactacgtagacgttaaggtaacaaaacg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308732 |
gaaaaggagagagaatatgaactttctaggtgtatcaaagtagaaaagcaaagttgtaaagcatggattccaactacgtagacgttaaggtaacaaaacg |
3308831 |
T |
|
| Q |
220 |
atgccgttttggagtatatnnnnnnnnnnnnnnnnttagtttgagtatccaaactcaaactagcatatgttttttatgtatacactccgacgagcaaatc |
319 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| || || |||||| |
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| T |
3308832 |
atgccgttttggagtatataaaaaaaattaaaaaattagt--gagtatccaaactcaaagtagcatatgttttttatgtatacactgtgaagatcaaatc |
3308929 |
T |
|
| Q |
320 |
ataaatcacaaattaaacaactttagtatctggtatctatcatttatctctgacg-ttaacaatcatcttaattgatatattttctgtatatgtattagc |
418 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
3308930 |
ataaatcacagattaaacaactttagtatctggtatctatcatttatctctgacgattaacaatcatctcaattgatatattttctatatatgtattagc |
3309029 |
T |
|
| Q |
419 |
acgttaatgatgttaaacaaagcttaaagtcaaaag------tgaaagtttgtttgaatgtgcatggaattgcatctgttgacttggcaactattggtgc |
512 |
Q |
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| T |
3309030 |
acgttaacgatgttaaacaaagcttaaagtcaaaagtgaaagtgaaagtttgtttgaatgtgcatggaattgcacctgttgacttggcagctgttggttc |
3309129 |
T |
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| Q |
513 |
tggaactgtcgcttcttaaaagtattgttatggatttctaaactatcgtatttgaattttcaagtctattttaaaaaatttacaatcaagtcgctctctt |
612 |
Q |
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||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3309130 |
tggaattgtcgcgtcttaaaagttttgttatggatttctaaactatcgtatttgaattttcaagtctattttaaaaaatttacaatcaagtcgctctctt |
3309229 |
T |
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| Q |
613 |
taagatgttttgtggcaccatttaaaattttgcaaggtagaaaattaaccatgttgcctccaagagacaatcaactaca |
691 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
3309230 |
taagatgttttgtggcaccatttaaaattttgcaaggtagaaaattaaccatgttgcctccaagacacaatcaactaca |
3309308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 451 - 504
Target Start/End: Complemental strand, 3227842 - 3227789
Alignment:
| Q |
451 |
aaagtgaaagtttgtttgaatgtgcatggaattgcatctgttgacttggcaact |
504 |
Q |
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| T |
3227842 |
aaagtgaaagttcgtttgaatgtgcatggaattgcatctgttgacttggcaact |
3227789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 594 - 630
Target Start/End: Complemental strand, 8030566 - 8030530
Alignment:
| Q |
594 |
acaatcaagtcgctctctttaagatgttttgtggcac |
630 |
Q |
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| T |
8030566 |
acaatcaggtcgctctctttaagacgttttgtggcac |
8030530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 603 - 674
Target Start/End: Complemental strand, 19578495 - 19578424
Alignment:
| Q |
603 |
tcgctctctttaagatgttttgtggcaccatttaaaattttgcaaggtagaaaattaaccatgttgcctcca |
674 |
Q |
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||||||||||||||| |||||||||||| | ||||||| ||||||| ||| || ||||||| |||||||| |
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| T |
19578495 |
tcgctctctttaagacgttttgtggcactacctaaaattgtgcaaggaagactatcaaccatgctgcctcca |
19578424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 602 - 630
Target Start/End: Original strand, 12254092 - 12254120
Alignment:
| Q |
602 |
gtcgctctctttaagatgttttgtggcac |
630 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
12254092 |
gtcgctctctttaagatgttttgtggcac |
12254120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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