View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10958_high_2 (Length: 565)
Name: NF10958_high_2
Description: NF10958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10958_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 19 - 557
Target Start/End: Original strand, 33521371 - 33521910
Alignment:
| Q |
19 |
ataagtatcctcagcgcccgctgaagtccgtgcttcatgttctctttgtcgaattcttcatctaactcatagtttatcctaccctcgctcttcacctctc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33521371 |
ataagtatcctcagcgcccgctgaagtccgtgcttcatgttctctttgtcgaattcttcatctaactcatagtttatcctaccctcgctcttcacctctc |
33521470 |
T |
|
| Q |
119 |
cacagcctttgtcctgaataattgtgatgaaatgaacagtcctcgaatatcttagcattctttcattgaagtcaaatccggattcccaaggaatcacggt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||| |
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| T |
33521471 |
cacagcctttgtcctgaataattgtgatgaaatgaacagtcctcgaatatcttagcattctttctttgaagtcgaatccggattcccaaggaatcatggt |
33521570 |
T |
|
| Q |
219 |
agaaaatgctcctggtcctagtgaaggagtttcaattatagattttacttttgagtcttcatctgatagcactttgtgtacagaagttattattcctccc |
318 |
Q |
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||||||||| |||||||||||||| |||||||||||||||| | ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33521571 |
agaaaatgcgcctggtcctagtgatggagtttcaattatagctcttactttagagtcatcatctgatagcactttgtgtacagaagttattattcctccc |
33521670 |
T |
|
| Q |
319 |
tcatagctttta-ccttgagatcagacattgtgtctggaaaatgtccccacgtcattagcacgggatgaagatgaaagtgtcagccgatattcttattct |
417 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| |
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| T |
33521671 |
tcatagcttttacccttgagatcagacattgtgtctggaaaatgtccccacgtcattagcaccggatgaagatgaaggtgtcggccgatattcttattct |
33521770 |
T |
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| Q |
418 |
ttaatccactagagatcattaaaggtggcgtggaaagtgctccacatgatgagattgttgctttggcctcaacatgaattttccatgtgatgttttctgt |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
33521771 |
ttaatccactagagatcattaaaggtggcgtggaaagtgctccacatgatgagattgttgctttggcctcaacttgaattttctatgtgatgttttctgt |
33521870 |
T |
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| Q |
518 |
taaaacatttgccataactcctaaacatttctttcttctc |
557 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
33521871 |
taaaacatttgccataactcctaaacatttctttcttctc |
33521910 |
T |
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