View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10958_high_5 (Length: 346)
Name: NF10958_high_5
Description: NF10958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10958_high_5 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 15 - 346
Target Start/End: Complemental strand, 38546673 - 38546344
Alignment:
| Q |
15 |
atgaagagtgtgttcatgtgagtcttattggaaaaataaacttagcagcatcatggtctaagaattcttatgattcggcacgtttaaactctcctaccct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38546673 |
atgaagagtgtgttcatgtgagtcttattggaaaaataaacttagcagcatcatggtctaagaattcttatgattcggcacgtttaaactctcctaccct |
38546574 |
T |
|
| Q |
115 |
tgctgatattttgccattcaaatatttttctggagattgtttaagtgtgtcttatgccagtatggagccattgtctgattctctctcagaaggaaggtga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38546573 |
tgctgatattttgccattcaaatatttttctggagattgtttaagtgtgtcttatgcgagtatggagccattgtctgattctctctcagaaggaaggtga |
38546474 |
T |
|
| Q |
215 |
tcgagaaccaaaatcaagcaagtgaaccaggtggcattttccaatgtttgtaatacattctgaacaagtaagataggtagcattccataagtaggagttc |
314 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38546473 |
tcgagaaccgaaatcaagcaagtgaaccaggtggcattttccaatgtttgtaatacattctgaacaagtaagataggtagcattccataagta--agttc |
38546376 |
T |
|
| Q |
315 |
atggtttagaatccgatatctctatttgacta |
346 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |
|
|
| T |
38546375 |
ttggtttagaatccgatatctctatgtgacta |
38546344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University