View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10958_low_1 (Length: 571)
Name: NF10958_low_1
Description: NF10958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10958_low_1 |
 | |
|
| [»] scaffold1749 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 533; Significance: 0; HSPs: 14)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 13 - 553
Target Start/End: Complemental strand, 33641943 - 33641403
Alignment:
| Q |
13 |
cagatcctatatattcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33641943 |
cagatcctatatattcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgtt |
33641844 |
T |
|
| Q |
113 |
gcgagtgtcttcacctctgtaggtgacaaacacatcataataatttttctttgaagaagttacaagagctaaagatgagttgctgctactagccatctaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33641843 |
gcgagtgtcttcacctctgtaggtgacaaacacatcataataatttttctttgaagaagttacaagagctaaagatgagttgctgctactagccatctaa |
33641744 |
T |
|
| Q |
213 |
gtaagctaaatttttagagaagttgattaggcaacgtgaatctatcaattaaaaaaggcacatatcaatattatgaatgaacttaaaaaatgcatatata |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33641743 |
gtaagctaaatttttagagaagttgattgggcaacgtgaatctatcaattaaaaaaggcacatatcaatattatgaatgaacttaaaaaatgcatatata |
33641644 |
T |
|
| Q |
313 |
aatattatgaacaagtttataagcgttgatttcgtggcaccttcttttcaataattattgattggtttataagtcaatcactatttgtaaacatgaatga |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33641643 |
aatattatgaacaagtttataagcgttgatttcgtggcaccttcttttcaataattattgattggtttataagtcaatcactatttgtaaacatgaatga |
33641544 |
T |
|
| Q |
413 |
agccgtatggttcttgctttcaataatggagttttggaattcacgggttccttcttgacagcttccccgtgggccatttggtgttttggtctcattgaga |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33641543 |
agccgtatggttcttgctttcaataatggagttttggaattcacgggttccttcttgacagcttccccgtgggccatttggtgttttggtctcattgaga |
33641444 |
T |
|
| Q |
513 |
gagtggttcatgccgtgaggtacacaatattccgtaaatcg |
553 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33641443 |
gagtggttcatgccgtgaggtacacaatatttcgtaaatcg |
33641403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 6 - 368
Target Start/End: Original strand, 33307233 - 33307605
Alignment:
| Q |
6 |
aggagcacagatcctatatattcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtca |
105 |
Q |
| |
|
|||||| ||| | ||||| ||||||| |||||||||||| |||||||||||||| | | ||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
33307233 |
aggagctcaggttctatagattcacccttttgaagattagtgtcatcccgaaatgcaaaaatgccttttgtttcaagggcatcaaaaagaaaatcagtaa |
33307332 |
T |
|
| Q |
106 |
aattgttgcgagtgtcttcacctctgtaggtgacaaacacatcataataatttttctttgaagaagttacaagagctaaagatgagttgctgctactagc |
205 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||| |||||||||||||| || ||| |||| ||||| |
|
|
| T |
33307333 |
agttgttgcgagtgtcttcacctctgaaggtgacaaacacatcataatagttgtttcttgaagaagtcacaagagctaaagaagaattgttgctgctagc |
33307432 |
T |
|
| Q |
206 |
catctaagtaagctaaatttttagagaagttgattaggcaac----gtgaatcta-tcaattaaaaaaggcacatatcaatattatgaatgaacttaaaa |
300 |
Q |
| |
|
||||| | |||||| || |||||||| | | ||| |||||| |||| | | || |||||| ||| |||||||| |||| ||||||||||||| |
|
|
| T |
33307433 |
catctgattaagctgaaattttagaggattggatatggcaactattatgaaggaacttaaaaaaaaaaagcatatatcaatgttataaatgaacttaaaa |
33307532 |
T |
|
| Q |
301 |
aatgca-tatataaatattat----gaacaagtttataagcgttgatttcgtggcaccttcttttcaataatt |
368 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33307533 |
aatgcattatataaatattatgaacgaacaagtttataagcgttgatttcgtggcaccttcttaccaataatt |
33307605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 33060321 - 33060506
Alignment:
| Q |
25 |
attcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttc |
124 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
33060321 |
attcacctttttgaagattaatgacatcccgaaataccataatgccttttgtttcaagggcatcaaaaagaaaatcagtgaaattgttgcgagtatcttc |
33060420 |
T |
|
| Q |
125 |
acctctgtaggtgacaaacacatcataataatttttctttgaagaagttacaagagctaaagatgagttgctgctactagccatct |
210 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
33060421 |
acctctaaaggtgacaaacacatcataatgatttttctttgaagaagtcacaagagctgaagatgatttgctgctgctagccatct |
33060506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 33361264 - 33361449
Alignment:
| Q |
25 |
attcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttc |
124 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||||| ||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33361264 |
attcaccttttggaagattagtgtcatccaaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatcagtgaaattgttgcgagtgtcttc |
33361363 |
T |
|
| Q |
125 |
acctctgtaggtgacaaacacatcataataatttttctttgaagaagttacaagagctaaagatgagttgctgctactagccatct |
210 |
Q |
| |
|
|||||| || |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||| |
|
|
| T |
33361364 |
acctctaaagatgacaaacacatcataatgatttttctttgaagaagtcacaagagctgaagatgagttgttgctgctagccatct |
33361449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 25 - 229
Target Start/End: Original strand, 33390839 - 33391043
Alignment:
| Q |
25 |
attcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttc |
124 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||| | ||||||||||| ||| ||||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
33390839 |
attcacctttttgaagatttctgttatcccgaaatacaagaatgccttttgtttccagggcatcaaaaagaaaatcaatgaaattgttgcgagtgtcttc |
33390938 |
T |
|
| Q |
125 |
acctctgtaggtgacaaacacatcataataatttttctttgaagaagttacaagagctaaagatgagttgctgctactagccatctaagtaagctaaatt |
224 |
Q |
| |
|
||||| | |||||||||||||||||||||||| | | ||||||||||| ||||||||| ||||||||||||| | |||||||||| | |||||||||| |
|
|
| T |
33390939 |
acctcggaaggtgacaaacacatcataataatatctttttgaagaagtcacaagagctgaagatgagttgctattgctagccatctgaataagctaaatg |
33391038 |
T |
|
| Q |
225 |
tttag |
229 |
Q |
| |
|
||||| |
|
|
| T |
33391039 |
tttag |
33391043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 25 - 289
Target Start/End: Original strand, 33265648 - 33265916
Alignment:
| Q |
25 |
attcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttc |
124 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||||| ||||||||||||| || ||||||||||||||||||||| || |||||||| ||||| ||||| |
|
|
| T |
33265648 |
attcaccttttggaagattagtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatctgtgaaattgttccgagtatcttc |
33265747 |
T |
|
| Q |
125 |
acctctgtaggtgacaaacacatcataataatttttctttgaagaagttacaagagctaaagatgagttgctgctactagccatctaagtaagctaaatt |
224 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| | |||| ||||| ||||| || |||||||||||||| | |||||||||| | |||| |||||| |
|
|
| T |
33265748 |
acctctgaaggtgacaaatacatcataataatttcttcttgatgaagtcccaagaactgaagatgagttgctggtgctagccatctgaataagttaaatt |
33265847 |
T |
|
| Q |
225 |
tttagagaagttgattaggcaacg----tgaatctatcaattaaaaaaggcacatatcaatattatgaa |
289 |
Q |
| |
|
||||||| | | || ||||||| ||||||||||| |||||||| ||| |||| ||||||||||| |
|
|
| T |
33265848 |
tttagaggattgtatatggcaacgtgaatgaatctatcacttaaaaaaagcatatattaatattatgaa |
33265916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 25 - 289
Target Start/End: Original strand, 33274792 - 33275060
Alignment:
| Q |
25 |
attcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttc |
124 |
Q |
| |
|
||||||||||| |||||||| |||||||| |||||| ||||||||||||| || ||||||||||||||||||||| || |||||||| ||||| ||||| |
|
|
| T |
33274792 |
attcaccttttggaagattagtgtcatccgaaaatacaataatgccttttgtttgaagggcatcaaaaagaaaatctgtgaaattgttccgagtatcttc |
33274891 |
T |
|
| Q |
125 |
acctctgtaggtgacaaacacatcataataatttttctttgaagaagttacaagagctaaagatgagttgctgctactagccatctaagtaagctaaatt |
224 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||| | |||| ||||| ||||| || |||||||||||||| | |||||||||| | |||| |||||| |
|
|
| T |
33274892 |
acctctgaaggtgacaaatacatcataataatttcttcttgatgaagtcccaagaactgaagatgagttgctggtgctagccatctgaataagttaaatt |
33274991 |
T |
|
| Q |
225 |
tttagagaagttgattaggcaacg----tgaatctatcaattaaaaaaggcacatatcaatattatgaa |
289 |
Q |
| |
|
||||||| | | || ||||||| ||||||||||| |||||||| ||| |||| ||||||||||| |
|
|
| T |
33274992 |
tttagaggattgtatatggcaacgtgaatgaatctatcacttaaaaaaagcatatattaatattatgaa |
33275060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 25 - 210
Target Start/End: Original strand, 33403377 - 33403562
Alignment:
| Q |
25 |
attcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttc |
124 |
Q |
| |
|
||||||| | |||||||||| ||||||| |||||| | | ||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
33403377 |
attcaccctgttgaagattagtgtcatctcgaaatgcaaaaatgccttttgtttcaagggcatcaaaaagaaaatcagtgaaattgttccgagtgtcttc |
33403476 |
T |
|
| Q |
125 |
acctctgtaggtgacaaacacatcataataatttttctttgaagaagttacaagagctaaagatgagttgctgctactagccatct |
210 |
Q |
| |
|
|||||| |||||| ||||||||| ||||||||| | |||||||||| ||||||||| |||| ||||||||||| |||||||||| |
|
|
| T |
33403477 |
acctctaaaggtgataaacacatcgtaataatttcttcttgaagaagtcacaagagctgaagacgagttgctgctgctagccatct |
33403562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 26 - 231
Target Start/End: Original strand, 33412685 - 33412890
Alignment:
| Q |
26 |
ttcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttca |
125 |
Q |
| |
|
||||||||||| |||||| ||||||||| |||| | ||| ||||| | |||||| |||||||||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
33412685 |
ttcaccttttttaagatttgtgtcatccctaaatgcataaatacctttggtttcaagtgcatcaaaaagataatcagtgaaattgttgcgagtgtcttca |
33412784 |
T |
|
| Q |
126 |
cctctgtaggtgacaaacacatcataataatttttctttgaagaagttacaagagctaaagatgagttgctgctactagccatctaagtaagctaaattt |
225 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||| || | ||||| | | |||||||||||| |
|
|
| T |
33412785 |
cctctgaaggtgacaaacacatcataataatttcttcttgaagaagtcacaagagctaaagatgagttgctactgttggccatttgattaagctaaattt |
33412884 |
T |
|
| Q |
226 |
ttagag |
231 |
Q |
| |
|
|||||| |
|
|
| T |
33412885 |
ttagag |
33412890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 31566438 - 31566250
Alignment:
| Q |
25 |
attcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttc |
124 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| | ||| ||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
31566438 |
attcacctttttgaagatttgtatcatcccgaaatacaaaaataccttttgtttcaaaggcatcaaaaagaaaatcaatgaaattgttgcgagtgtcttc |
31566339 |
T |
|
| Q |
125 |
acctctgtaggtgacaaacacatcataataat-ttttct--ttgaagaagttacaagagctaaagatgagttgctgctactagccatct |
210 |
Q |
| |
|
||||||| | |||||||| ||||||||||||| ||||| |||||||||||||||||||| ||||||||| ||||| |||||||||| |
|
|
| T |
31566338 |
acctctgaaagtgacaaatacatcataataatagtttcttcttgaagaagttacaagagctgtagatgagttactgctgctagccatct |
31566250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 230
Target Start/End: Original strand, 9169554 - 9169662
Alignment:
| Q |
122 |
ttcacctctgtaggtgacaaacacatcataataatttttctttgaagaagttacaagagctaaagatgagttgctgctactagccatctaagtaagctaa |
221 |
Q |
| |
|
||||||||| |||||| |||||||||||||| |||| || ||| ||| || || | ||||| ||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
9169554 |
ttcacctctaaaggtgaaaaacacatcataatgatttctccttggagatgtcaccatagctagagatgagttgctgctgctagccatcagaataagctaa |
9169653 |
T |
|
| Q |
222 |
atttttaga |
230 |
Q |
| |
|
||||||||| |
|
|
| T |
9169654 |
atttttaga |
9169662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 33288322 - 33288526
Alignment:
| Q |
6 |
aggagcacagatcctatatattcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtca |
105 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||||| ||||||||| |||| | ||| || |||| || ||| ||||| || ||| || |||| | |
|
|
| T |
33288322 |
aggagctcaggtcctatggattcacctttttgaagattggtgtcatccctaaatgcataaataccgtttgttttaagagcatctaatagataaccagtga |
33288421 |
T |
|
| Q |
106 |
aattgttgcgagtgtcttcacctctgtaggtgacaaacacatcataataatttttctttgaagaagttacaagagctaaagatgagttgctgctactagc |
205 |
Q |
| |
|
|||||||||||||||| || ||||| |||||| |||||| || |||| |||| || || ||| || || | ||||| |||||||||||||| ||||| |
|
|
| T |
33288422 |
aattgttgcgagtgtcatcgcctctaaaggtgataaacacgtcgtaatgatttctccttctagatgtcaccatagctatggatgagttgctgctgctagc |
33288521 |
T |
|
| Q |
206 |
catct |
210 |
Q |
| |
|
||||| |
|
|
| T |
33288522 |
catct |
33288526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 437 - 489
Target Start/End: Original strand, 33413002 - 33413054
Alignment:
| Q |
437 |
aatggagttttggaattcacgggttccttcttgacagcttccccgtgggccat |
489 |
Q |
| |
|
||||||| |||||||||||| |||| |||||||||||||| || ||||||||| |
|
|
| T |
33413002 |
aatggaggtttggaattcactggttgcttcttgacagctttccagtgggccat |
33413054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 33288635 - 33288675
Alignment:
| Q |
332 |
taagcgttgatttcgtggcaccttcttttcaataattattg |
372 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | |||||| |
|
|
| T |
33288635 |
taagcgttggtttcgtggcaccttcttttcaaaatttattg |
33288675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 13 - 210
Target Start/End: Complemental strand, 17438015 - 17437818
Alignment:
| Q |
13 |
cagatcctatatattcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgtt |
112 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||| |||||| | | |||| ||||| ||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
17438015 |
cagatcctatggattcacctttttgaagattagtgtcatctcgaaatgcaaaaatgtcttttctttcaagggcgtcaaaaagaaaatcagtgaaattgtt |
17437916 |
T |
|
| Q |
113 |
gcgagtgtcttcacctctgtaggtgacaaacacatcataataatttttctttgaagaagttacaagagctaaagatgagttgctgctactagccatct |
210 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||| ||| ||| ||||||||||||||||||| |
|
|
| T |
17437915 |
gcgagtatcttcacctctaaaggtgacaaacacatcataatgatttttctttgaagaagtcacaagagctgaagttgatttgctgctactagccatct |
17437818 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 17437724 - 17437673
Alignment:
| Q |
332 |
taagcgttgatttcgtggcaccttcttttcaataatt-attgattggtttat |
382 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||| ||||||| |||||| |
|
|
| T |
17437724 |
taagcgttgatttcgtggcactttctttacaataattgattgatttgtttat |
17437673 |
T |
|
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Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 31476330 - 31476203
Alignment:
| Q |
25 |
attcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttc |
124 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||| | | || |||||| ||| |||||||||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
31476330 |
attcacctttttgaagattagtgtcatccctaaatgcaaaaacacctttttcttcgagggcatcaaaaaggaaatcagtgaaattgttgcgagtatcttc |
31476231 |
T |
|
| Q |
125 |
acctctgtaggtgacaaacacatcataa |
152 |
Q |
| |
|
||||||| || | |||||||| |||||| |
|
|
| T |
31476230 |
acctctgaagctcacaaacacgtcataa |
31476203 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 164
Target Start/End: Complemental strand, 31488915 - 31488776
Alignment:
| Q |
25 |
attcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttc |
124 |
Q |
| |
|
|||||||||||||||| ||| ||||||| | ||| | | |||||||||| || ||||||| |||||||| |||||| || ||| |||||| ||||| |
|
|
| T |
31488915 |
attcacctttttgaagcttagtgtcatctctaaacgcaaaaatgccttttctttgaagggcagcaaaaagatgatcagtaaagttgaagcgagtatcttc |
31488816 |
T |
|
| Q |
125 |
acctctgtaggtgacaaacacatcataataatttttcttt |
164 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| |||||| |
|
|
| T |
31488815 |
acctctgaaggtgacaaacacgtcataataattattcttt |
31488776 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 31501440 - 31501308
Alignment:
| Q |
25 |
attcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttc |
124 |
Q |
| |
|
||||||||||| |||||||| ||||||||| |||| | | |||||||| | | | ||||||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
31501440 |
attcaccttttggaagattagtgtcatccctaaatgcaagaatgccttctctgttgaaggcatcaaaaagatgataagtgaaattgttgcgagtgtcttc |
31501341 |
T |
|
| Q |
125 |
acctctgtaggtgacaaacacatcataataatt |
157 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||| |
|
|
| T |
31501340 |
acctctaaaagtgacaaacgcatcataataatt |
31501308 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 31030518 - 31030650
Alignment:
| Q |
25 |
attcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttc |
124 |
Q |
| |
|
|||||||||||||||||||| |||| || | |||| | | |||||||||| || ||||||| |||||||| |||| | || ||| |||||| ||||| |
|
|
| T |
31030518 |
attcacctttttgaagattagtgtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagcgagtatcttc |
31030617 |
T |
|
| Q |
125 |
acctctgtaggtgacaaacacatcataataatt |
157 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
31030618 |
gcctctaaaggtgacaaacacatcataataatt |
31030650 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 25 - 157
Target Start/End: Original strand, 31020637 - 31020769
Alignment:
| Q |
25 |
attcacctttttgaagattaatgtcatcccgaaataccataatgccttttgattcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttc |
124 |
Q |
| |
|
|||||||||||||||||||| ||| || | |||| | | |||||||||| || ||||||| |||||||| |||| | || ||| |||||| ||||| |
|
|
| T |
31020637 |
attcacctttttgaagattagcgtcgtctctaaatgcaaaaatgccttttctttgaagggcagcaaaaagatgatcaatgaagttgaagcgagtatcttc |
31020736 |
T |
|
| Q |
125 |
acctctgtaggtgacaaacacatcataataatt |
157 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |
|
|
| T |
31020737 |
gcctctaaaggtgacaaacacatcataataatt |
31020769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 31496209 - 31496142
Alignment:
| Q |
86 |
atcaaaaagaaaatcagtcaaattgttgcgagtgtcttcacctctgtaggtgacaaacacatcataat |
153 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||| ||||||| |
|
|
| T |
31496209 |
atcaaaaagatgatcagtgaaattgttgcgagtgtcctcacctctaaaggtgacaaacacgtcataat |
31496142 |
T |
|
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Target: scaffold1749 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 259
Target Start/End: Original strand, 964 - 1146
Alignment:
| Q |
77 |
ttcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttcacctctgtaggtgacaaacacatcataataatttttctttgaagaagttaca |
176 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||| |||||| ||||| || ||| ||| || |
|
|
| T |
964 |
ttcaagggcagcaaaaagaaaattagtgaaattgttgcgagtatcttcacctctgaaggtgacaaacacgtcataacaatttctccttggcaaaggcacc |
1063 |
T |
|
| Q |
177 |
agagctaaagatgagttgctgctactagccatctaagtaagctaaatttttagagaagttgattaggcaacgtgaatctatca |
259 |
Q |
| |
|
||||| ||| ||||||||||| |||||||||| | || | ||| |||||||| | | |||| | ||| |||||||||||| |
|
|
| T |
1064 |
agagccgtagacgagttgctgctgctagccatctgaatatgataattttttagatgattggattggacaaagtgaatctatca |
1146 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 77 - 259
Target Start/End: Original strand, 9725 - 9907
Alignment:
| Q |
77 |
ttcaagggcatcaaaaagaaaatcagtcaaattgttgcgagtgtcttcacctctgtaggtgacaaacacatcataataatttttctttgaagaagttaca |
176 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||||||||||||| |||||||||||| ||||||||||||| |||||| ||||| || ||| ||| || |
|
|
| T |
9725 |
ttcaagggcagcaaaaagaaaattagtgaaattgttgcgagtatcttcacctctgaaggtgacaaacacgtcataacaatttctccttggcaaaggcacc |
9824 |
T |
|
| Q |
177 |
agagctaaagatgagttgctgctactagccatctaagtaagctaaatttttagagaagttgattaggcaacgtgaatctatca |
259 |
Q |
| |
|
||||| ||| ||||||||||| |||||||||| | || | ||| |||||||| | | |||| | ||| |||||||||||| |
|
|
| T |
9825 |
agagccgtagacgagttgctgctgctagccatctgaatatgataattttttagatgattggattggacaaagtgaatctatca |
9907 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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