View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10958_low_8 (Length: 252)
Name: NF10958_low_8
Description: NF10958
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10958_low_8 |
 | |
|
| [»] scaffold0376 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 234
Target Start/End: Complemental strand, 20478521 - 20478297
Alignment:
| Q |
10 |
ggagtagcataggcggaggtgctgcaaatgatgagcgtgaaagtactttaaatcaattgttggtggagatggatggttttggaactactgctggagttgt |
109 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20478521 |
ggagtagtagaggcggaggtgctgcaaatgatgagcgtgaaagtactttaaatcaattgttggtggagatggatggttttggacctactgctggagttgt |
20478422 |
T |
|
| Q |
110 |
cgtgctcgcaggtacaaatagacctgatgtattagacaaagccttacttagaccggggcgttttgaccgccaaataacaattgataaacccgacattaag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20478421 |
cgtgctcgcaggtacaaatagacctgatgtattagacaaagccttacttagaccggggcgttttgaccgccaaataacaattgataaacccgacattaag |
20478322 |
T |
|
| Q |
210 |
ggtcgtggccagatatttcagattt |
234 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
20478321 |
ggtcgtgaccagatatttcagattt |
20478297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 32 - 234
Target Start/End: Complemental strand, 38513980 - 38513778
Alignment:
| Q |
32 |
tgcaaatgatgagcgtgaaagtactttaaatcaattgttggtggagatggatggttttggaactactgctggagttgtcgtgctcgcaggtacaaataga |
131 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
38513980 |
tgcaaatgatgaacgtgaaagtactttaaatcaattgttggtggagatggatggttttggaaccactgctggagttgttgtgctggcaggtacaaataga |
38513881 |
T |
|
| Q |
132 |
cctgatgtattagacaaagccttacttagaccggggcgttttgaccgccaaataacaattgataaacccgacattaagggtcgtggccagatatttcaga |
231 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||| |||||||||||||| |
|
|
| T |
38513880 |
cctgatgtattagacaaagccctacttagaccggggcgttttgaccgccaaataacaattgataaacctgacatcaaaggtcgtgaccagatatttcaga |
38513781 |
T |
|
| Q |
232 |
ttt |
234 |
Q |
| |
|
||| |
|
|
| T |
38513780 |
ttt |
38513778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 34 - 234
Target Start/End: Original strand, 29728440 - 29728640
Alignment:
| Q |
34 |
caaatgatgagcgtgaaagtactttaaatcaattgttggtggagatggatggttttggaactactgctggagttgtcgtgctcgcaggtacaaatagacc |
133 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
29728440 |
caaatgatgagcgtgatcgtactttaaatcaattgttggtggagatggatggttttggaaccactgctggagttgttgtgcttgcaggtacgaatagacc |
29728539 |
T |
|
| Q |
134 |
tgatgtattagacaaagccttacttagaccggggcgttttgaccgccaaataacaattgataaacccgacattaagggtcgtggccagatatttcagatt |
233 |
Q |
| |
|
|||| ||||||| ||||| | || || || |||||||| || |||||||||||| |||||||||||||||| || ||||||| |||||||||||||||| |
|
|
| T |
29728540 |
tgatatattagataaagctctgctcaggcctgggcgtttcgatcgccaaataacagttgataaacccgacatcaaaggtcgtgaccagatatttcagatt |
29728639 |
T |
|
| Q |
234 |
t |
234 |
Q |
| |
|
| |
|
|
| T |
29728640 |
t |
29728640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 34 - 234
Target Start/End: Original strand, 24004037 - 24004237
Alignment:
| Q |
34 |
caaatgatgagcgtgaaagtactttaaatcaattgttggtggagatggatggttttggaactactgctggagttgtcgtgctcgcaggtacaaatagacc |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| | |
|
|
| T |
24004037 |
caaatgatgagcgtgaaagtactttaaatcaattgttggtggaaatggatggttttggaaccactgctggagttgttgtgcttgcaggtacaaatagagc |
24004136 |
T |
|
| Q |
134 |
tgatgtattagacaaagccttacttagaccggggcgttttgaccgccaaataacaattgataaacccgacattaagggtcgtggccagatatttcagatt |
233 |
Q |
| |
|
|||| |||||||||| ||||||||||| || ||||||||||||||| ||| |||||||| |||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
24004137 |
tgatatattagacaacgccttacttaggcctgggcgttttgaccgcacgatatcaattgatgtacccgacattaaaggtcgtgaccagatatttcagatt |
24004236 |
T |
|
| Q |
234 |
t |
234 |
Q |
| |
|
| |
|
|
| T |
24004237 |
t |
24004237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 42 - 234
Target Start/End: Original strand, 2971 - 3163
Alignment:
| Q |
42 |
gagcgtgaaagtactttaaatcaattgttggtggagatggatggttttggaactactgctggagttgtcgtgctcgcaggtacaaatagacctgatgtat |
141 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| ||||| || |||||||||||| ||||||||| |
|
|
| T |
2971 |
gagcgtgaaaatactttaaatcaattgttggtggagatggatggatttggaaccacttctggagttgttgtgctagctggtacaaatagagctgatgtat |
3070 |
T |
|
| Q |
142 |
tagacaaagccttacttagaccggggcgttttgaccgccaaataacaattgataaacccgacattaagggtcgtggccagatatttcagattt |
234 |
Q |
| |
|
||||||||||| || ||||||| ||||||||||||||||||||||||||||| ||||||||||| || ||||| | ||||||||||| |||| |
|
|
| T |
3071 |
tagacaaagccctagttagaccagggcgttttgaccgccaaataacaattgacaaacccgacatcaaaggtcgcgatcagatatttcaaattt |
3163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 34 - 234
Target Start/End: Original strand, 16837915 - 16838115
Alignment:
| Q |
34 |
caaatgatgagcgtgaaagtactttaaatcaattgttggtggagatggatggttttggaactactgctggagttgtcgtgctcgcaggtacaaatagacc |
133 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
16837915 |
caaatgatgagcgtgaacgtactttaaatcaattgttggtggagatggatggttttggaaccactgctggagttgttgtgcttgcaggtacgaatagacc |
16838014 |
T |
|
| Q |
134 |
tgatgtattagacaaagccttacttagaccggggcgttttgaccgccaaataacaattgataaacccgacattaagggtcgtggccagatatttcagatt |
233 |
Q |
| |
|
|||| ||||||| ||||| | || || | |||||||| || |||||||||||| ||||||||||||||| || ||||||| |||||||||||||||| |
|
|
| T |
16838015 |
tgatatattagataaagctctgctcaggcatgggcgtttcgatcgccaaataacagctgataaacccgacatcaaaggtcgtgaccagatatttcagatt |
16838114 |
T |
|
| Q |
234 |
t |
234 |
Q |
| |
|
| |
|
|
| T |
16838115 |
t |
16838115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 189
Target Start/End: Original strand, 45284835 - 45284926
Alignment:
| Q |
98 |
tgctggagttgtcgtgctcgcaggtacaaatagacctgatgtattagacaaagccttacttagaccggggcgttttgaccgccaaataacaa |
189 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
45284835 |
tgctggagttgttgtgctggcaggtaccaatagacctgatgtattagacaaagccctacttaggccggggcgttttgacctccaaataacaa |
45284926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 45284797 - 45284842
Alignment:
| Q |
32 |
tgcaaatgatgagcgtgaaagtactttaaatcaattgttggtggag |
77 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
45284797 |
tgcaaatgatgagggtgaaagtactttaaatcaattgttgctggag |
45284842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University