View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_high_10 (Length: 373)
Name: NF10959_high_10
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 77 - 369
Target Start/End: Complemental strand, 26691175 - 26690883
Alignment:
| Q |
77 |
tcaaaaattatgtccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaa |
176 |
Q |
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| T |
26691175 |
tcaagaattatgtccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtgcatatcatcaagaa |
26691076 |
T |
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| Q |
177 |
tcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtct |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||| |
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| T |
26691075 |
tcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagtgcaaccattgtcaaagtct |
26690976 |
T |
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| Q |
277 |
ccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttctctctc |
369 |
Q |
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| T |
26690975 |
ccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttttctctc |
26690883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 77 - 369
Target Start/End: Complemental strand, 26732486 - 26732194
Alignment:
| Q |
77 |
tcaaaaattatgtccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaa |
176 |
Q |
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| T |
26732486 |
tcaagaattatgtccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtgcatatcatcaagaa |
26732387 |
T |
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| Q |
177 |
tcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtct |
276 |
Q |
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| T |
26732386 |
tcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagagcaaccattgtcaaagtct |
26732287 |
T |
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| Q |
277 |
ccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttctctctc |
369 |
Q |
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| T |
26732286 |
ccgatttaaccatgtcataatttgatcccaatgtagggtctactatttgttcaaccaaagatttcatttctaataatttccttcttttctctc |
26732194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 89 - 369
Target Start/End: Complemental strand, 26695324 - 26695044
Alignment:
| Q |
89 |
tccatgactttgaattgaattgagaaagataaacatgaaaactaataaccatcaaagatggctcttagtttgtggatatcatcaagaatcatgttcatga |
188 |
Q |
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| T |
26695324 |
tccatgactttgaattgaattaaggaagataaacatgaaaactaataaccatcaaagaaggctcttagtttgtgcatatcatgaagaatcatgttcatga |
26695225 |
T |
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| Q |
189 |
gtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtgaaagtctccaatttaacca |
288 |
Q |
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| T |
26695224 |
gtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacactttagagcaaccattgtcaaagtctccaatttaacca |
26695125 |
T |
|
| Q |
289 |
tgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctaataatttccttcttctctctc |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||| |
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| T |
26695124 |
tgtcataatttgatcccaatgtagggtctactatttgttccaccaaagatttcatttctgataaattccttcttttctctc |
26695044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 26732638 - 26732554
Alignment:
| Q |
1 |
acatttactcaactattttttggttgcaaactaaactacaaaagaaaatgacctatataaatagagcagtatgacttcaaaaatt |
85 |
Q |
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| T |
26732638 |
acatttactcaactattttttggttgcaaactaaactgcaaaagaaaatgacctatataaatagagcagtatgacttcaaaaatt |
26732554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 26691317 - 26691243
Alignment:
| Q |
6 |
tactcaactattttttggttgcaaactaaactacaaaagaaaatgacctatataaatagagcagtatgacttcaaaaatt |
85 |
Q |
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| T |
26691317 |
tactcaactattttttggttgcaaacta-----caaaagaaaatgacctatataaatagagcagtatgacttaaaaaatt |
26691243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 170 - 328
Target Start/End: Original strand, 26674996 - 26675154
Alignment:
| Q |
170 |
tcaagaatcatgttcatgagtttgaagcatttcaacaacttcactcatgttaggtctcatgtctttctcttcctcaacacacttcaaagcaaccattgtg |
269 |
Q |
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|||||||||||||| |||| |||| ||| | |||||||||| ||||||| | ||||| | |||||||||| ||| ||||| | |||||| |||| || |
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| T |
26674996 |
tcaagaatcatgttgatgactttggagcctctcaacaacttgactcatggtgggtctaacatctttctctttctctacacaatccaaagccaccactgcc |
26675095 |
T |
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| Q |
270 |
aaagtctccaatttaaccatgtcataatttgatcccaatgtagggtctactatttgttc |
328 |
Q |
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| T |
26675096 |
aaggtcttcaattgaacaatgtcataatttaatcccaatgcagggtcaactatttgttc |
26675154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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