View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_high_11 (Length: 363)
Name: NF10959_high_11
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 54 - 347
Target Start/End: Original strand, 6347554 - 6347847
Alignment:
| Q |
54 |
agcttttaaattgattgtggttcaacacttcatgcataaatccacaatttcaacataaaattgtattcctcaacatgtaatttttgcacaaacaaaattg |
153 |
Q |
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| T |
6347554 |
agcttttaaattgattgtggttcaacacttcatgcataaatccacaatttcaacataaaattgtattcctcaacatgtaatttttgcacaaacaaaattg |
6347653 |
T |
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| Q |
154 |
ctaactctctcnnnnnnnnnnnnnnttgctaactctttcaactactcattttaccataagaaattggttcnnnnnnnaaatcagacctaatgagctcaat |
253 |
Q |
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| T |
6347654 |
ctaactctctcaaaaaaaataaaaattgctaactctttcaactactcattttaccataagaaattggttctttttttaaatcagacctaatgagctcaat |
6347753 |
T |
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| Q |
254 |
gtaatgatccgacttagtgaggatctcactcatggtttaacattgctatcagagtcatgattcaatttgattgatgagttggtgtgggatcaag |
347 |
Q |
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| T |
6347754 |
gtaatgatccgacttagcgaggatctcactcatggtttaacattgctatcagagtcatgattcaatttgattgatgagttggtgtgggatcaag |
6347847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 6331555 - 6331640
Alignment:
| Q |
53 |
tagcttttaaattgattgtggttcaacacttcatgcataaatccacaatttcaacataaaattgtattcctcaacatgtaattttt |
138 |
Q |
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| T |
6331555 |
tagcttttaaattgattatcgttcaacacttcatgcgtaaatccacaatttcaacataagattgtattcctcaacatacaattttt |
6331640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 316
Target Start/End: Original strand, 6331750 - 6331828
Alignment:
| Q |
238 |
acctaatgagctcaatgtaatgatccgacttagtgaggatctcactcatggtttaacattgctatcagagtcatgattc |
316 |
Q |
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| T |
6331750 |
acctaatgagctcaatgtaatgatcgaactaagtgagaatctcactcatggttgaacattggtatcaaagtcatgattc |
6331828 |
T |
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