View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10959_high_12 (Length: 361)
Name: NF10959_high_12
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_high_12 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] scaffold0096 (1 HSPs) |
| |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] scaffold0034 (1 HSPs) |
| | |
|
| [»] scaffold0433 (1 HSPs) |
| | |
|
| [»] scaffold0192 (1 HSPs) |
| | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0063 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 22 - 361
Target Start/End: Complemental strand, 24976029 - 24975691
Alignment:
| Q |
22 |
gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
24976029 |
gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaacgccaaaggtggccttcctccgtggttgg |
24975930 |
T |
|
| Q |
122 |
aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg |
221 |
Q |
| |
|
||||| | | |||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| | ||||||||| ||| |||||||| |||| |
|
|
| T |
24975929 |
agggggctagcaagtttacactcatgagttcctcgaactttctcttcatgctctccatggagacgttcagtgttcctcccgtgataacgttggcggaggg |
24975830 |
T |
|
| Q |
222 |
gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga |
321 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||| ||||||||||||| || |
|
|
| T |
24975829 |
gaactgctcccaggtgcatgaata-aggggtgatttccacgttgtcagggaagtcaccgagatgttctatggacatggcaactgtcttaccaggctctga |
24975731 |
T |
|
| Q |
322 |
gccgtcaatgatgagttcgacggtctttctctctgcttct |
361 |
Q |
| |
|
||| |||| ||| || |||||||| ||||| ||||||||| |
|
|
| T |
24975730 |
gccatcaacgataagctcgacggtttttctttctgcttct |
24975691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 361
Target Start/End: Original strand, 23490410 - 23490744
Alignment:
| Q |
22 |
gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
23490410 |
gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaagaagttctgaatcatagaatgccaaaggtggccttcctccgtggttcg |
23490509 |
T |
|
| Q |
122 |
aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg |
221 |
Q |
| |
|
|| || | | ||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| | | ||||||| | ||| |||||||| |||| |
|
|
| T |
23490510 |
agagggctagcaa----acactcatgagttcctcgaactttctcttcatgctccccatggagacgtttagtgttcctcctgtgataacgttggcggaggg |
23490605 |
T |
|
| Q |
222 |
gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga |
321 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||| |
|
|
| T |
23490606 |
gaactgctcccaggtgcatgagtaacggg-tgatttccacgttgtcagggaaatcaccgagatgttccacagacatggcaactatcttaacaggctcgga |
23490704 |
T |
|
| Q |
322 |
gccgtcaatgatgagttcgacggtctttctctctgcttct |
361 |
Q |
| |
|
| |||| | |||||| |||||||||||||| || |||||| |
|
|
| T |
23490705 |
gtcgtccacgatgagctcgacggtctttctttccgcttct |
23490744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 13537618 - 13537860
Alignment:
| Q |
17 |
catttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaag |
116 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||| | |
|
|
| T |
13537618 |
cattggccattgatgctcgcacgagcaaaggaatgactgaatttgaaactccaccaggaagttttgaatcatagaatgccaaaggtggtcttcctctgtg |
13537717 |
T |
|
| Q |
117 |
gttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggca |
216 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||||||||| ||||||||||||| |
|
|
| T |
13537718 |
gttggagggagccagcaagttgacactcatgagttcctcaaactttctcttcatgcttcccatggagacattcagtgttcctcccgtgatgacgttggca |
13537817 |
T |
|
| Q |
217 |
taggggaactgctcccaggtgcatgagtaggggggtgatttcca |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13537818 |
gaggggaactgctcccaggtgcatgagta-aggggtgatttcca |
13537860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 42790481 - 42790608
Alignment:
| Q |
22 |
gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg |
121 |
Q |
| |
|
||||| ||||||| |||| ||| |||||||||| |||||||| |||||| ||||||||||| || ||||| ||||| ||||| || ||||| ||||||| |
|
|
| T |
42790481 |
gccattgatgctcatacgaacaatggaatggctgcatttgaagatccaccgggaagttctgagtcgtagaacgccaagggtggtctccctccgaggttgg |
42790580 |
T |
|
| Q |
122 |
aggggaccaacaagttgacactcatgag |
149 |
Q |
| |
|
| ||| ||| ||||||||| |||||||| |
|
|
| T |
42790581 |
aaggggccagcaagttgacgctcatgag |
42790608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 42790657 - 42790733
Alignment:
| Q |
220 |
gggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacat |
297 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| ||||| |||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
42790657 |
gggaactgttcccaagtgcatgagtaggggg-tgattcccacgttgtcagggaaatcacccagctgttccacggacat |
42790733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 361
Target Start/End: Complemental strand, 24671 - 24328
Alignment:
| Q |
17 |
catttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaag |
116 |
Q |
| |
|
|||| |||||||||||| | || || |||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24671 |
cattggccatcgatgcttgtactagaaaaggaatggcttagtttgaagctccgccaggaagttctgaatcatagaatgccaaaggtggccttcctccgtg |
24572 |
T |
|
| Q |
117 |
gttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggca |
216 |
Q |
| |
|
||||||||| | | |||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||| | ||||||||| ||| | ||||| |
|
|
| T |
24571 |
attggagggggctagcaagttgacactcatgagttcctcgaacttcctcttcatgctccccatggagacgttcagtgttcctcccgtgataaaattggcg |
24472 |
T |
|
| Q |
217 |
taggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggc |
316 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
24471 |
gaggggaactgctgccacgtgcatgagta-aagggtgatttccacgttctcaggcaaatcaccgagatgttccacggacatggcaactgtcttaccagac |
24373 |
T |
|
| Q |
317 |
tcggagccgtcaatgatgagttcgacggtctttctctctgcttct |
361 |
Q |
| |
|
|| ||||| ||||||||||| |||||||||||||| || |||||| |
|
|
| T |
24372 |
tcagagccatcaatgatgagctcgacggtctttctttccgcttct |
24328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 359
Target Start/End: Original strand, 27963583 - 27963924
Alignment:
| Q |
17 |
catttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaag |
116 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||| | |
|
|
| T |
27963583 |
cattggccatcgatgctcgtacgagcaaaggaatggctgaatttgaagctctacaaggaagttctgaatcatagaacgccaaaggtggccttcctccgtg |
27963682 |
T |
|
| Q |
117 |
gttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggca |
216 |
Q |
| |
|
|||||||||| | | ||||||||||||||||||||| || || |||||||||||||| |||||||||| ||| | ||||||||| ||| |||||||| |
|
|
| T |
27963683 |
gttggagggggctagcaagttgacactcatgagttcttcaaaatttctcttcatgctccccatggagacgtttagcgttcctcccgtgataacgttggcg |
27963782 |
T |
|
| Q |
217 |
taggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggc |
316 |
Q |
| |
|
|||| ||||| ||||| ||||||||||| |||||| |||||| |||||| ||||||||||||||||||| ||||||||||| |||| |||||||||| |
|
|
| T |
27963783 |
gagggaaactgttcccacgtgcatgagta-aggggtggtttccaagttgtccgggaaatcaccgagatgtttcacggacatggaaactgccttaccaggc |
27963881 |
T |
|
| Q |
317 |
tcggagccgtcaatgatgagttcgacggtctttctctctgctt |
359 |
Q |
| |
|
||||||||||| | || ||| |||||||||||||| ||||||| |
|
|
| T |
27963882 |
tcggagccgtctacgacgagctcgacggtctttctttctgctt |
27963924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 22 - 300
Target Start/End: Original strand, 18733957 - 18734234
Alignment:
| Q |
22 |
gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg |
121 |
Q |
| |
|
||||| |||||||| |||||||| |||||| |||||||||| |||||||| || |||||||||| ||||| |||| |||||| | || ||||||| |
|
|
| T |
18733957 |
gccattgatgctcgtacgagcaacggaatgactgaatttgaggctccacctggtagttctgaattgtagaacgccagaggtggtttacccttgaggttgg |
18734056 |
T |
|
| Q |
122 |
aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg |
221 |
Q |
| |
|
|||| ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| |||| |
|
|
| T |
18734057 |
agggttccagcaagttgacacttttgagttcttcgaactttctcttcatgcttcccatggagatgttgaccgttcctcccgtgatgacgttggcagaggg |
18734156 |
T |
|
| Q |
222 |
gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggc |
300 |
Q |
| |
|
||||||||| ||||| ||||||| |||||||||||||| ||| ||| |||||||||| |||||||| ||||||||||| |
|
|
| T |
18734157 |
aaactgctcctaggtgaatgagta-gggggtgatttccaagttatcaaggaaatcacccagatgttcaacggacatggc |
18734234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 143 - 321
Target Start/End: Complemental strand, 19862132 - 19861955
Alignment:
| Q |
143 |
tcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatga |
242 |
Q |
| |
|
||||||| || ||||| || ||||||||| ||||||||||||||| | |||||| | |||| ||||||| ||||||||||||||||||||| ||| |
|
|
| T |
19862132 |
tcatgagctcttcgaatttcctcttcatgtttcccatggagatgtctagcgttcctcttgtgatgccgttggcggaggggaactgctcccaggtgcttga |
19862033 |
T |
|
| Q |
243 |
gtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga |
321 |
Q |
| |
|
|||| ||||||||||| | | | | |||||||||| |||||||| ||||| |||| |||| |||| | ||||||||| |
|
|
| T |
19862032 |
gtag-ggggtgatttctatatcttgaaggaaatcacccagatgttcaacggatatggaaactgtcttgcgaggctcgga |
19861955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 8e-86; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 47 - 351
Target Start/End: Complemental strand, 18278678 - 18278375
Alignment:
| Q |
47 |
gaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcat |
146 |
Q |
| |
|
|||||| | |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || | |||||| | | |||||||| |||||| |
|
|
| T |
18278678 |
gaatgggtaaatttgaagctccatcgggaagttctgaatcatagaatgccaaaggtggccttcctccgtgggtagagggggctagcaagttgatactcat |
18278579 |
T |
|
| Q |
147 |
gagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtag |
246 |
Q |
| |
|
||| |||| |||||||||||||||||| ||||||||| |||| | ||||||||| |||||||||||| ||||||| || ||||||||||||||||| |
|
|
| T |
18278578 |
gagatccttgaactttctcttcatgctgtccatggagacgttcggtgttcctcccgtgatgacgttggcggaggggaaatgttcccaggtgcatgagta- |
18278480 |
T |
|
| Q |
247 |
gggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcggagccgtcaatgatgagttcgacggtc |
346 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| |||||||||| |||||| ||||||||| |
|
|
| T |
18278479 |
acgggtgatttcgacgttgtcagggaaatcaccgagatgttccacggacttggcgactgtcttaccaggctcagagccgtcaacgatgagctcgacggtc |
18278380 |
T |
|
| Q |
347 |
tttct |
351 |
Q |
| |
|
||||| |
|
|
| T |
18278379 |
tttct |
18278375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 3844141 - 3844307
Alignment:
| Q |
17 |
catttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaag |
116 |
Q |
| |
|
|||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| | |
|
|
| T |
3844141 |
cattggccatcgatg-tcgcacgagtaaaggaatggctgaatttgaagctccaccaggaagttccgaatcatagaattccaaacgtggccttcctctgtg |
3844239 |
T |
|
| Q |
117 |
gttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggaga |
184 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3844240 |
gttggaaggagccagcaagttgacactcatgagttcctcgaactttctcttcatgcttctcatggaga |
3844307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 15311016 - 15311241
Alignment:
| Q |
22 |
gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| || ||||| | || ||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
15311016 |
gccatcgatgctcgcacgagcaaaggaatggcaaaatttgaagctccaccgggcagttcgtagtcgtagaacgccaaaggtggtcttcctccattgttgg |
15311115 |
T |
|
| Q |
122 |
aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg |
221 |
Q |
| |
|
||||| ||| ||||||||| |||||||| | | ||| || |||||||| ||||||||||||||| || ||||||||| | |||||||||||| |||| |
|
|
| T |
15311116 |
agggggccagcaagttgacgctcatgagctttttgaatttcttcttcatgattcccatggagatgtccagtattcctcctgtgatgacgttggcggaggg |
15311215 |
T |
|
| Q |
222 |
gaactgctcccaggtgcatgagtagg |
247 |
Q |
| |
|
||| || ||||| |||||||| |||| |
|
|
| T |
15311216 |
gaattgttcccatgtgcatgactagg |
15311241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 10268088 - 10268219
Alignment:
| Q |
56 |
aatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctc |
155 |
Q |
| |
|
||||||| |||||||| || ||||| | || ||||| |||||| |||| ||||||| | ||||||||||||||| ||||||||| |||||||| || || |
|
|
| T |
10268088 |
aatttgaggctccaccgggcagttcgtagtcgtagaacgccaaaagtggtcttcctctatggttggaggggaccagcaagttgacgctcatgagctcttc |
10268187 |
T |
|
| Q |
156 |
gaactttctcttcatgcttcccatggagatgt |
187 |
Q |
| |
|
||| || |||||||||||||||||||| |||| |
|
|
| T |
10268188 |
gaatttcctcttcatgcttcccatggaaatgt |
10268219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 298
Target Start/End: Original strand, 10268273 - 10268320
Alignment:
| Q |
251 |
gtgatttccacgttgtcagggaaatcaccgagatgttccacggacatg |
298 |
Q |
| |
|
|||||||| | |||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
10268273 |
gtgatttctatgttgtcggggaaatcacccagatgttccacggacatg |
10268320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 28 - 309
Target Start/End: Original strand, 251332 - 251612
Alignment:
| Q |
28 |
gatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttggagggga |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| || |||||||| || |||||||||| |||| | ||||||||| |||||||||| |
|
|
| T |
251332 |
gatgctcgcacgagcaaaggaatggctgaatttgaggctccactgggtagttctgagtcgtagaatgccataggtagtcttcctccattgttggaggggg |
251431 |
T |
|
| Q |
128 |
ccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggggaactg |
227 |
Q |
| |
|
||| || ||| || ||||| || || ||||||||||||||||||||||||||| ||||||||| |||| |||| |||||||||||| |||| ||||| |
|
|
| T |
251432 |
ccagcaggttcacgctcattagctcttcgaactttctcttcatgcttcccatgaagatgttcagcgttccgcccgtgatgacgttggcggagggaaactg |
251531 |
T |
|
| Q |
228 |
ctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttctt |
309 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||||||||||| ||| |||| |
|
|
| T |
251532 |
ttcccaggtgcatgagta-gggggtgatttccacattgtcagggaaattgcccagatgttccacggacatggcgactatctt |
251612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0034 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold0034
Description:
Target: scaffold0034; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 26976 - 26662
Alignment:
| Q |
9 |
gacatcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggcctt |
108 |
Q |
| |
|
|||||| || || |||||||||||| || |||||||||||||||| ||||||||||||||||||| ||||| || || ||||| || |||||||| ||| |
|
|
| T |
26976 |
gacatctacgttggccatcgatgcttgcgcgagcaaaggaatggcataatttgaagctccaccaggtagttcggagtcgtagaacgcgaaaggtggtctt |
26877 |
T |
|
| Q |
109 |
cctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatga |
208 |
Q |
| |
|
||||| ||||||||||||| | ||||||||| |||||||| || ||||| || ||||||||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
26876 |
cctccgtggttggaggggactagcaagttgacgctcatgagctcttcgaatttcctcttcatgcttcccatggagatgtccagcgttcctcctatgatga |
26777 |
T |
|
| Q |
209 |
cgttggcataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttct |
308 |
Q |
| |
|
|||||||| ||||||||||| || || |||||||||| | |||||||||| | | |||||||||||||| || |||||||| |||||||||||| ||| |
|
|
| T |
26776 |
cgttggcagaggggaactgcacctagctgcatgagta-gcgggtgatttctatatcttcagggaaatcacccagttgttccacagacatggcaactgtct |
26678 |
T |
|
| Q |
309 |
taccaggctcggagcc |
324 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
26677 |
tgccaggctcggagcc |
26662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 76 - 300
Target Start/End: Original strand, 23927793 - 23928015
Alignment:
| Q |
76 |
agttctgaatcatagaatgccaaaggtggccttcctccaaggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttc |
175 |
Q |
| |
|
|||||||| || ||||| ||||||||| | ||||||||| ||||||||||| ||| || ||||||||||||||| || ||||| |||||||||||||||| |
|
|
| T |
23927793 |
agttctgagtcgtagaacgccaaaggtagtcttcctccacggttggagggggccagcaggttgacactcatgagctcttcgaattttctcttcatgcttc |
23927892 |
T |
|
| Q |
176 |
ccatggagatgttcaatattcctcccgggatgacgttggcataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaat |
275 |
Q |
| |
|
||||| ||||||||| ||||||||| |||||||||||| |||| ||||| ||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
23927893 |
ccatgcagatgttcagcgttcctcccgtgatgacgttggcggagggaaactgttcccaggtgcatgtgta--ggggtgatttccacgttgtcagggaaat |
23927990 |
T |
|
| Q |
276 |
caccgagatgttccacggacatggc |
300 |
Q |
| |
|
| || ||||||||||| ||||||| |
|
|
| T |
23927991 |
cgcccagatgttccacaaacatggc |
23928015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 27345485 - 27345585
Alignment:
| Q |
13 |
tcaacatttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctc |
112 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27345485 |
tcaacatttgccatcgatgcttgcacgagcaaaggaatggctgaatttgaagccccaccgggaagttctgaatcatagaatgccaaaggtggccttcctc |
27345584 |
T |
|
| Q |
113 |
c |
113 |
Q |
| |
|
| |
|
|
| T |
27345585 |
c |
27345585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0433 (Bit Score: 108; Significance: 4e-54; HSPs: 1)
Name: scaffold0433
Description:
Target: scaffold0433; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 11019 - 10853
Alignment:
| Q |
17 |
catttgccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaag |
116 |
Q |
| |
|
|||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||| | |
|
|
| T |
11019 |
cattggccatcgatg-tcgcacgagtaaaggaatggctgaatttgaagctccaccaggaagttccgaatcatagaattccaaacgtggccttcctctgtg |
10921 |
T |
|
| Q |
117 |
gttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggaga |
184 |
Q |
| |
|
|||||| || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10920 |
gttggaaggagccagcaagttgacactcatgagttcctcgaactttctcttcatgcttctcatggaga |
10853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0192 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: scaffold0192
Description:
Target: scaffold0192; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 22 - 276
Target Start/End: Original strand, 8027 - 8286
Alignment:
| Q |
22 |
gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg |
121 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| | |||| ||| ||||| || || ||||||||||| ||||| |||||||| | ||||| |
|
|
| T |
8027 |
gccatcgatgctcgcacgagcaaatgaatggctgaatttgaacccccactaggcagttcagagtcgtagaatgccaagggtggtcttcctccgatgttgg |
8126 |
T |
|
| Q |
122 |
ag------gggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggc |
215 |
Q |
| |
|
| ||||||| ||| |||||||||||||| ||||| || ||||| ||||||||||| || ||||| || | | ||||||||| |||||||||||| |
|
|
| T |
8127 |
aatcaaaagggaccagcaaattgacactcatgagctcctcaaattttctattcatgcttcctatagagatatttactgttcctcccgtgatgacgttggc |
8226 |
T |
|
| Q |
216 |
ataggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatc |
276 |
Q |
| |
|
| | |||||||| ||||||||||||||||| || ||||||||| |||||||||||||| |
|
|
| T |
8227 |
agaagggaactgttcccaggtgcatgagta-aggtacgatttccacattgtcagggaaatc |
8286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 22 - 325
Target Start/End: Original strand, 386543 - 386845
Alignment:
| Q |
22 |
gccatcgatgctcgcacgagcaaaggaatggctgaatttgaagctccaccaggaagttctgaatcatagaatgccaaaggtggccttcctccaaggttgg |
121 |
Q |
| |
|
||||||||||||| || |||||||| ||||| |||||||| ||||||| ||| || || | || | ||| | || ||||| |||||||| |||||| |
|
|
| T |
386543 |
gccatcgatgctcatacaagcaaaggtatggcagaatttgaggctccactaggtagctccaagtcgtggaacgtcaggggtggtcttcctccgtggttgg |
386642 |
T |
|
| Q |
122 |
aggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcataggg |
221 |
Q |
| |
|
||||||| || ||||| || ||| |||| || || || || ||||||||||||||||||||||||| ||| |||||| | ||||| |||||| |||| |
|
|
| T |
386643 |
aggggacaaaaaagttaacgctcgtgagctcttcaaatttcctcttcatgcttcccatggagatgtccaacgttcctctagtgatgatgttggcggaggg |
386742 |
T |
|
| Q |
222 |
gaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggcaactttcttaccaggctcgga |
321 |
Q |
| |
|
|||||| |||||||| |||||||| ||||| |||||| | |||||| ||||||||| | ||||||||||| |||||||||| | || ||||||||||| |
|
|
| T |
386743 |
gaactgttcccaggttcatgagta-gggggcgatttcaaggttgtcggggaaatcatctagatgttccacaaacatggcaacagttttgccaggctcgga |
386841 |
T |
|
| Q |
322 |
gccg |
325 |
Q |
| |
|
|||| |
|
|
| T |
386842 |
gccg |
386845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 118 - 300
Target Start/End: Complemental strand, 39705 - 39524
Alignment:
| Q |
118 |
ttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgacgttggcat |
217 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||| || || ||||| ||||||||||||||||||||||||| ||||||||| |||||||||| | |
|
|
| T |
39705 |
ttggaggggaccagcaggttgacgctcatgagttcttcaaaatttcttttcatgcttcccatggagatgttcatcgttcctcccgtgatgacgttgacgg |
39606 |
T |
|
| Q |
218 |
aggggaactgctcccaggtgcatgagtaggggggtgatttccacgttgtcagggaaatcaccgagatgttccacggacatggc |
300 |
Q |
| |
|
| || ||||| |||||| ||||||||||||| || ||||||||||||||| |||||||| | ||| |||||| ||||||| |
|
|
| T |
39605 |
atggaaactgttcccagctgcatgagtagggtac-gacttccacgttgtcaggaaaatcacccaaatgatccacgtacatggc |
39524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 24039908 - 24040001
Alignment:
| Q |
116 |
ggttggaggggaccaacaagttgacactcatgagttcctcgaactttctcttcatgcttcccatggagatgttcaatattcctcccgggatgac |
209 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| || ||||| || ||||||||||||||||||||||||| ||| ||||||| | |||||| |
|
|
| T |
24039908 |
ggttggaggggaccagcaagttgacgctcatgagctcttcgaatttcctcttcatgcttcccatggagatgtccaacgttcctcctgtgatgac |
24040001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 16093091 - 16093051
Alignment:
| Q |
22 |
gccatcgatgctcgcacgagcaaaggaatggctgaatttga |
62 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16093091 |
gccattgatgctcgcccgagcaaaggaatggctgaatttga |
16093051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University