View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10959_high_13 (Length: 356)

Name: NF10959_high_13
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10959_high_13
NF10959_high_13
[»] chr1 (6 HSPs)
chr1 (16-343)||(49444029-49444351)
chr1 (37-89)||(47872479-47872531)
chr1 (147-198)||(48176364-48176415)
chr1 (47-89)||(44261724-44261766)
chr1 (109-198)||(33856934-33857023)
chr1 (109-198)||(33923900-33923989)
[»] chr3 (1 HSPs)
chr3 (276-325)||(14961350-14961399)


Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 16 - 343
Target Start/End: Original strand, 49444029 - 49444351
Alignment:
Q  16 aatccatcaattaatagtgcaaaattaggactccattacactcaatccaacaaaaattgaacaatttaaatatggtggatatatatcgcaaagaaactgc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49444029 aatccatcaattaatagtgcaaaattaggactccattacactcaatccaacaaaaattgaacaatttaaatatggtggatatatatcgcaaagaaactgc 49444128  T
Q  116 agaaaagcatcaagatatgagaattacaatgaatagtgataaactactaaccagtggtctcaaattgaaatggaagtgtgattctattctatctgtatga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||    
T  49444129 agaaaagcatcaagatatgagaattacaatgaatagtgataaactactaaccagtggtctcaaattgaaatggaagtgtg-----attctatctgtatga 49444223  T
Q  216 cctttaagcaaccccttcacactttgatcctggaattcttttagaactttcaaaatcccgttataattttccctcctaacttgaaaccaaacttttactg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||    
T  49444224 cctttaagcaaccccttcacactttgatcctggaattcttttagaactttcaaaatcccgttataatttttcctcctaacttgaaacgaaacttttactg 49444323  T
Q  316 ccttacgaaacgccaattcatcagcttc 343  Q
    ||||||||||||||||||||||||||||    
T  49444324 ccttacgaaacgccaattcatcagcttc 49444351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 47872531 - 47872479
Alignment:
Q  37 aaattaggactccattacactcaatccaacaaaaattgaacaatttaaatatg 89  Q
    ||||||||||||||||||||| ||||||||||| ||||||||| |||||||||    
T  47872531 aaattaggactccattacacttaatccaacaaagattgaacaaattaaatatg 47872479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 48176415 - 48176364
Alignment:
Q  147 aatagtgataaactactaaccagtggtctcaaattgaaatggaagtgtgatt 198  Q
    |||| ||||| ||||||||||||||||||||| |||||| ||||||||||||    
T  48176415 aataatgatagactactaaccagtggtctcaagttgaaacggaagtgtgatt 48176364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 89
Target Start/End: Original strand, 44261724 - 44261766
Alignment:
Q  47 tccattacactcaatccaacaaaaattgaacaatttaaatatg 89  Q
    ||||||| ||||||||||||||| ||| |||||||||||||||    
T  44261724 tccattatactcaatccaacaaagattaaacaatttaaatatg 44261766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 33857023 - 33856934
Alignment:
Q  109 aaactgcagaaaagcatcaagatatgagaattacaatgaatagtgataaactactaaccagtggtctcaaattgaaatggaagtgtgatt 198  Q
    |||| |||||||| ||| || ||||| ||| | |||| |||| | |||||||||||| || |  |||||| |||||||||||||||||||    
T  33857023 aaacggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctcaagttgaaatggaagtgtgatt 33856934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 198
Target Start/End: Original strand, 33923900 - 33923989
Alignment:
Q  109 aaactgcagaaaagcatcaagatatgagaattacaatgaatagtgataaactactaaccagtggtctcaaattgaaatggaagtgtgatt 198  Q
    |||| |||||||| ||| || ||||| ||| | |||| |||| | |||||||||||| || |  |||||| |||||||||||||||||||    
T  33923900 aaacggcagaaaatcataaacatatgtgaagtgcaattaataatcataaactactaatcattcatctcaagttgaaatggaagtgtgatt 33923989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 325
Target Start/End: Complemental strand, 14961399 - 14961350
Alignment:
Q  276 ttataattttccctcctaacttgaaaccaaacttttactgccttacgaaa 325  Q
    ||||||||||||||| || ||||||||  |||||| ||||||||||||||    
T  14961399 ttataattttccctcttatcttgaaacgcaactttgactgccttacgaaa 14961350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University