View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10959_high_16 (Length: 343)

Name: NF10959_high_16
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10959_high_16
NF10959_high_16
[»] chr6 (5 HSPs)
chr6 (1-325)||(33605430-33605754)
chr6 (216-290)||(6071123-6071197)
chr6 (221-288)||(33605971-33606038)
chr6 (216-290)||(8481918-8481991)
chr6 (218-290)||(12092575-12092647)
[»] chr5 (8 HSPs)
chr5 (216-290)||(31509614-31509688)
chr5 (216-290)||(9510613-9510687)
chr5 (218-295)||(36522325-36522402)
chr5 (218-276)||(41632775-41632833)
chr5 (239-290)||(31509745-31509796)
chr5 (218-295)||(36568655-36568732)
chr5 (287-319)||(13042774-13042806)
chr5 (287-319)||(13112772-13112804)
[»] chr8 (8 HSPs)
chr8 (216-284)||(9620387-9620455)
chr8 (218-284)||(4154765-4154831)
chr8 (218-282)||(20995502-20995566)
chr8 (218-298)||(33831971-33832051)
chr8 (215-290)||(4154373-4154448)
chr8 (218-276)||(41972151-41972209)
chr8 (293-330)||(3670136-3670173)
chr8 (218-295)||(9620764-9620841)
[»] chr1 (8 HSPs)
chr1 (220-295)||(1187452-1187527)
chr1 (215-290)||(22793268-22793343)
chr1 (218-294)||(1188677-1188753)
chr1 (218-276)||(22077602-22077660)
chr1 (217-290)||(50556443-50556516)
chr1 (218-290)||(19283548-19283620)
chr1 (217-284)||(41184524-41184591)
chr1 (228-276)||(47379892-47379940)
[»] chr3 (7 HSPs)
chr3 (218-284)||(46546424-46546490)
chr3 (220-290)||(39336322-39336392)
chr3 (217-330)||(31190009-31190122)
chr3 (218-290)||(47965008-47965080)
chr3 (218-276)||(21832450-21832508)
chr3 (216-265)||(12747870-12747919)
chr3 (217-298)||(37991062-37991143)
[»] chr7 (4 HSPs)
chr7 (235-284)||(10341842-10341891)
chr7 (218-264)||(28301662-28301708)
chr7 (217-299)||(30244693-30244775)
chr7 (255-295)||(37345948-37345988)
[»] chr4 (8 HSPs)
chr4 (218-290)||(28034222-28034294)
chr4 (215-295)||(34544094-34544176)
chr4 (218-276)||(3244556-3244614)
chr4 (218-276)||(54741283-54741341)
chr4 (293-326)||(18879882-18879915)
chr4 (223-284)||(23556963-23557024)
chr4 (218-298)||(2740693-2740773)
chr4 (228-276)||(7147746-7147794)
[»] chr2 (10 HSPs)
chr2 (216-276)||(30313169-30313229)
chr2 (218-295)||(33561539-33561616)
chr2 (236-287)||(29874119-29874170)
chr2 (216-298)||(30323455-30323537)
chr2 (218-295)||(962591-962668)
chr2 (243-284)||(13154480-13154521)
chr2 (218-295)||(33953859-33953936)
chr2 (220-284)||(3594277-3594341)
chr2 (216-284)||(29873636-29873704)
chr2 (218-295)||(41678455-41678534)
[»] scaffold0113 (1 HSPs)
scaffold0113 (215-290)||(39828-39903)


Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 33605430 - 33605754
Alignment:
Q  1 tctctggctatggggttcatctcttattgaggcctaaggagtaaagactttagtgacatcacctttaggtcagtcctgccaattattgtagatgtcctat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  33605430 tctctggctatggggttcatctcttattgaggcctaaggagtaaggactttagtgacctcacctttaggtcagtcctgccaattattgtagatgtcctat 33605529  T
Q  101 tctttctccatggtggtataaggaattattctgtaatctacaaaattgctttaatccataatcagcattagagcatgcataatatatattgtaaccaagg 200  Q
    |||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33605530 tctttctccatggtggtataaggaattattctgtcatctacaaatatgctttaatccataatcagcattagagcatgcataatatatattgtaacccagg 33605629  T
Q  201 catgtaactcattcaattgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacctattt 300  Q
    |||||||||||||||||||||||||| |||||| || ||||||||||||||   |||||||||||||||||||||| |||||||||||||||||||||||    
T  33605630 catgtaactcattcaattgttgtgtgcaagtgtgagctatatgtctcacatcagatagaaaagtggaggttgaacactttataattgagaagacctattt 33605729  T
Q  301 ccttaaggttttgggtaagtgtgtg 325  Q
    |||||| ||||||||||||||||||    
T  33605730 ccttaaagttttgggtaagtgtgtg 33605754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 6071123 - 6071197
Alignment:
Q  216 attgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgaga 290  Q
    ||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||||||||| ||||||| |||||    
T  6071123 attgttgtgtgcaagtgtgagttatatgtcccacattgaatagaaaagtggaggttgaacactttataagtgaga 6071197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 221 - 288
Target Start/End: Original strand, 33605971 - 33606038
Alignment:
Q  221 tgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattga 288  Q
    |||||| || ||| ||||||||||| ||||| | |||||||||||||||||||||| |||||||||||    
T  33605971 tgtgtgcaaatgtaagttatatgtcccacatcgaatagaaaagtggaggttgaacactttataattga 33606038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 8481918 - 8481991
Alignment:
Q  216 attgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgaga 290  Q
    ||||||||||| |||||| ||||||||||| |||||   ||| |||||||||||||||||| ||||||| |||||    
T  8481918 attgttgtgtgcaagtgtgagttatatgtc-cacatcagatataaaagtggaggttgaacactttataaatgaga 8481991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 12092647 - 12092575
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgaga 290  Q
    ||||||||| ||| ||  |||| ||||| ||||| | ||||||||||||||||||| || ||||||| |||||    
T  12092647 tgttgtgtgcaagggtgtgttagatgtcccacatcggatagaaaagtggaggttgagcactttataagtgaga 12092575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 216 - 290
Target Start/End: Original strand, 31509614 - 31509688
Alignment:
Q  216 attgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgaga 290  Q
    ||||||||||| |||||| ||||||||||||||||| | ||||||||||||||||||| || ||||||| |||||    
T  31509614 attgttgtgtgcaagtgtgagttatatgtctcacatcggatagaaaagtggaggttgagcactttataagtgaga 31509688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 9510687 - 9510613
Alignment:
Q  216 attgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgaga 290  Q
    ||||||||||| |||||| |||||||||| |||||||| |||||||||||||||||||   |||||||| |||||    
T  9510687 attgttgtgtgaaagtgtgagttatatgtttcacattgaatagaaaagtggaggttgagtcatttataagtgaga 9510613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 36522402 - 36522325
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacc 295  Q
    |||||| || |||||| ||||||||||||||||||| |||||||| |||| |||||||| ||||||| ||||| ||||    
T  36522402 tgttgtatgaaagtgtgagttatatgtctcacattggatagaaaaatggaagttgaacattttataagtgagaggacc 36522325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 41632775 - 41632833
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaaca 276  Q
    ||||||||| |||||| ||||||||||||||||| | ||||||||||  ||||||||||    
T  41632775 tgttgtgtgcaagtgtaagttatatgtctcacatcggatagaaaagtaaaggttgaaca 41632833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 31509745 - 31509796
Alignment:
Q  239 atatgtctcacattgtatagaaaagtggaggttgaacaatttataattgaga 290  Q
    ||||||||||||| | ||||||||||||||||||| || ||||||| |||||    
T  31509745 atatgtctcacatcggatagaaaagtggaggttgagcactttataagtgaga 31509796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 36568732 - 36568655
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacc 295  Q
    ||||||||| |||||| ||||||||||| ||||| | ||||||||||  | ||||||||  |||||| ||||| ||||    
T  36568732 tgttgtgtgcaagtgtgagttatatgtcccacatcggatagaaaagtaaaagttgaacaccttataagtgagatgacc 36568655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 13042774 - 13042806
Alignment:
Q  287 gagaagacctatttccttaaggttttgggtaag 319  Q
    ||||||||||||| |||||||||||||||||||    
T  13042774 gagaagacctattgccttaaggttttgggtaag 13042806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 319
Target Start/End: Original strand, 13112772 - 13112804
Alignment:
Q  287 gagaagacctatttccttaaggttttgggtaag 319  Q
    ||||||||||||| |||||||||||||||||||    
T  13112772 gagaagacctattgccttaaggttttgggtaag 13112804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 9620455 - 9620387
Alignment:
Q  216 attgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataa 284  Q
    ||||||||||| ||||||||||||||| || ||| ||| |||||||||||||| ||||||| |||||||    
T  9620455 attgttgtgtgcaagtgtcagttatatatcccacgttgaatagaaaagtggagtttgaacactttataa 9620387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 4154831 - 4154765
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataa 284  Q
    ||||||||| |||||| ||||||||||| |||||   |||||||||||||||||||||| |||||||    
T  4154831 tgttgtgtgcaagtgtgagttatatgtcccacatctgatagaaaagtggaggttgaacactttataa 4154765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 282
Target Start/End: Complemental strand, 20995566 - 20995502
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttat 282  Q
    ||||||||| |||||| |||||||||||||||||   ||| |||||||||||||||||| |||||    
T  20995566 tgttgtgtgcaagtgtgagttatatgtctcacatcagataaaaaagtggaggttgaacactttat 20995502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 33831971 - 33832051
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacctat 298  Q
    ||||||||| |||||| ||||||||||||||| ||| | |||||||| || |||||||| ||||||| | ||| |||||||    
T  33831971 tgttgtgtgcaagtgtgagttatatgtctcacgttgaagagaaaagtagaagttgaacactttataagtaagaggacctat 33832051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 290
Target Start/End: Complemental strand, 4154448 - 4154373
Alignment:
Q  215 aattgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgaga 290  Q
    |||||||||||| || ||| |||||||||||  ||||   |||||||||||||||||||||| ||||||| |||||    
T  4154448 aattgttgtgtgcaaatgtgagttatatgtcctacatcagatagaaaagtggaggttgaacactttataagtgaga 4154373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 41972151 - 41972209
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaaca 276  Q
    ||||||||| |||||| ||||||||||| ||||| | ||||||||||  ||||||||||    
T  41972151 tgttgtgtgcaagtgtgagttatatgtcccacatcggatagaaaagtaaaggttgaaca 41972209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 3670136 - 3670173
Alignment:
Q  293 acctatttccttaaggttttgggtaagtgtgtgatgtc 330  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  3670136 acctatttccttaaggttttgggtaagagtgtggtgtc 3670173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 9620841 - 9620764
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacc 295  Q
    ||||||||| |||||| ||||||||||||||||    |||||||||| || ||||| || ||||||| ||||| ||||    
T  9620841 tgttgtgtgcaagtgtgagttatatgtctcacaacagatagaaaagtagaagttgatcactttataagtgagaggacc 9620764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Complemental strand, 1187527 - 1187452
Alignment:
Q  220 ttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacc 295  Q
    ||||||| |||||| | ||||||||||||||| | ||| ||||||||||||| |||| ||||||| ||||||||||    
T  1187527 ttgtgtgcaagtgtgaattatatgtctcacatcgaatataaaagtggaggttaaacattttataagtgagaagacc 1187452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 22793268 - 22793343
Alignment:
Q  215 aattgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgaga 290  Q
    |||||||||| | |||||| ||||||||||| ||||| |||||||||||| ||||||||| | ||||||| |||||    
T  22793268 aattgttgtgagcaagtgtgagttatatgtcccacatcgtatagaaaagtagaggttgaaaactttataagtgaga 22793343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 294
Target Start/End: Complemental strand, 1188753 - 1188677
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagac 294  Q
    ||||||||| |||||| ||||||||||  || || | |||||||||||||||||||| | ||||||| |||||||||    
T  1188753 tgttgtgtgcaagtgtgagttatatgttccatatcggatagaaaagtggaggttgaatattttataagtgagaagac 1188677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 22077660 - 22077602
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaaca 276  Q
    ||||||||| |||||| ||||||||||||||||| | ||||||||||  ||||||||||    
T  22077660 tgttgtgtgcaagtgtgagttatatgtctcacatcggatagaaaagtaaaggttgaaca 22077602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 290
Target Start/End: Original strand, 50556443 - 50556516
Alignment:
Q  217 ttgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgaga 290  Q
    |||||| ||| ||||||  ||||||| || |||||  |||||||||| |||||||||||||||||||| |||||    
T  50556443 ttgttgcgtgcaagtgtgggttatatatcacacatcatatagaaaagcggaggttgaacaatttataagtgaga 50556516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 19283620 - 19283548
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgaga 290  Q
    ||||||||| |||||| ||||||||||| ||||  | ||||||||||||||||||| || ||| ||| |||||    
T  19283620 tgttgtgtgcaagtgtgagttatatgtcccacaccggatagaaaagtggaggttgagcactttgtaaatgaga 19283548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 284
Target Start/End: Complemental strand, 41184591 - 41184524
Alignment:
Q  217 ttgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataa 284  Q
    |||||||||| |||||| ||||||||||||||||| | ||| || |||  |||||||||| |||||||    
T  41184591 ttgttgtgtgcaagtgtgagttatatgtctcacatcggataaaatagtaaaggttgaacactttataa 41184524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 47379940 - 47379892
Alignment:
Q  228 aagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaaca 276  Q
    |||||| |||||||| || ||||| | ||||||||||||||||||||||    
T  47379940 aagtgtgagttatatatcccacatcggatagaaaagtggaggttgaaca 47379892  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 46546490 - 46546424
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataa 284  Q
    |||||||||||||||| |||||||||||  |||||| || |||| |||||||||||||| |||||||    
T  46546490 tgttgtgtgtaagtgtgagttatatgtcctacattggattgaaatgtggaggttgaacactttataa 46546424  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 290
Target Start/End: Complemental strand, 39336392 - 39336322
Alignment:
Q  220 ttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgaga 290  Q
    ||||||| |||||| ||||||||||| ||||| | |||||||  ||||||||||||| ||||||| |||||    
T  39336392 ttgtgtgcaagtgtgagttatatgtcccacatcggatagaaagttggaggttgaacactttataagtgaga 39336322  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 330
Target Start/End: Original strand, 31190009 - 31190122
Alignment:
Q  217 ttgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacctatttccttaaggttttgggt 316  Q
    |||||||||| |||||| ||| ||||||| ||||| | ||| || |||  ||||||||||  |||||| | ||| |||| ||  ||||||||||||||||    
T  31190009 ttgttgtgtgcaagtgtgagtgatatgtcccacatcggataaaagagtaaaggttgaacaccttataagttagaggacccatagccttaaggttttgggt 31190108  T
Q  317 aagtgtgtgatgtc 330  Q
    ||| ||||| ||||    
T  31190109 aagagtgtggtgtc 31190122  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 290
Target Start/End: Complemental strand, 47965080 - 47965008
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgaga 290  Q
    ||||||||| |||||| |||||||||| | |||| | ||||||||||||||||| |||| | ||||| |||||    
T  47965080 tgttgtgtgcaagtgtgagttatatgttttacatcggatagaaaagtggaggttaaacattatataagtgaga 47965008  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 21832508 - 21832450
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaaca 276  Q
    |||| |||| |||||| ||||||||||| ||||||| ||||||||||  ||||||||||    
T  21832508 tgttatgtgcaagtgtgagttatatgtcccacattggatagaaaagtaaaggttgaaca 21832450  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 12747919 - 12747870
Alignment:
Q  216 attgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtg 265  Q
    ||||||||||| |||||| ||||||||||| ||||| | |||||||||||    
T  12747919 attgttgtgtgcaagtgtgagttatatgtcccacatcggatagaaaagtg 12747870  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 298
Target Start/End: Complemental strand, 37991143 - 37991062
Alignment:
Q  217 ttgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacctat 298  Q
    |||||||||  |||||| ||||||||||||||||||| ||| || |||  ||||||||||  |||||| | ||| |||||||    
T  37991143 ttgttgtgtacaagtgtgagttatatgtctcacattggataaaatagtaaaggttgaacaccttataagtaagaggacctat 37991062  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 10341842 - 10341891
Alignment:
Q  235 agttatatgtctcacattgtatagaaaagtggaggttgaacaatttataa 284  Q
    ||||||||||||||||| | |||||||||||||||||||||| |||||||    
T  10341842 agttatatgtctcacatcggatagaaaagtggaggttgaacactttataa 10341891  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 264
Target Start/End: Complemental strand, 28301708 - 28301662
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagt 264  Q
    ||||||||| |||||| ||||||||||||||||| | ||||||||||    
T  28301708 tgttgtgtgcaagtgtgagttatatgtctcacatcggatagaaaagt 28301662  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 299
Target Start/End: Original strand, 30244693 - 30244775
Alignment:
Q  217 ttgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacctatt 299  Q
    |||||||||| |||||| ||||||||||| ||||||| ||| || |||  ||||||||||  |||||| | ||| ||||||||    
T  30244693 ttgttgtgtgcaagtgtgagttatatgtcccacattggataaaagagtaaaggttgaacaccttataaataagaggacctatt 30244775  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 37345948 - 37345988
Alignment:
Q  255 atagaaaagtggaggttgaacaatttataattgagaagacc 295  Q
    ||||||||||||||||| |||| ||||||| ||||||||||    
T  37345948 atagaaaagtggaggttaaacattttataagtgagaagacc 37345988  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 218 - 290
Target Start/End: Original strand, 28034222 - 28034294
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgaga 290  Q
    ||||||||| |||||| | ||||||||| | ||| | |||||||||||||||||||||| ||||||| |||||    
T  28034222 tgttgtgtgcaagtgtgaattatatgtcccgcatcggatagaaaagtggaggttgaacactttataagtgaga 28034294  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 295
Target Start/End: Original strand, 34544094 - 34544176
Alignment:
Q  215 aattgttgtgtgtaagtgtcagttatatgt--ctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacc 295  Q
    |||||||||| |||||||| |||||||| |  ||||||| | ||||||||||||||||||| || ||||||| ||||| ||||    
T  34544094 aattgttgtgagtaagtgtgagttatatatatctcacatcgaatagaaaagtggaggttgatcactttataaatgagaggacc 34544176  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 3244614 - 3244556
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaaca 276  Q
    ||||||||| |||||| ||||||||||||||||| | ||||||||||  ||||||||||    
T  3244614 tgttgtgtgcaagtgtgagttatatgtctcacatcggatagaaaagtaaaggttgaaca 3244556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 54741341 - 54741283
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaaca 276  Q
    ||||||||| |||||| | ||||||||||||||| | ||||||||||  ||||||||||    
T  54741341 tgttgtgtgcaagtgtgaattatatgtctcacatcggatagaaaagtaaaggttgaaca 54741283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 18879882 - 18879915
Alignment:
Q  293 acctatttccttaaggttttgggtaagtgtgtga 326  Q
    ||||||||||||||||||||||||||| ||||||    
T  18879882 acctatttccttaaggttttgggtaagagtgtga 18879915  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 23557024 - 23556963
Alignment:
Q  223 tgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataa 284  Q
    |||| |||||| ||||| |||| | |||| | |||||||||||||||||||||| |||||||    
T  23557024 tgtgcaagtgtgagttaaatgttttacatcggatagaaaagtggaggttgaacattttataa 23556963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 298
Target Start/End: Original strand, 2740693 - 2740773
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacctat 298  Q
    ||||||||| |||||| ||||||||||| ||||| | |||||| |||  ||||||||||  |||||| | ||| |||||||    
T  2740693 tgttgtgtgcaagtgtgagttatatgtcccacatcggatagaacagtaaaggttgaacaccttataagtaagaggacctat 2740773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 7147794 - 7147746
Alignment:
Q  228 aagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaaca 276  Q
    |||||| ||||| | |||||||||||  |||||||||||||||||||||    
T  7147794 aagtgtgagttagaagtctcacattgcttagaaaagtggaggttgaaca 7147746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 30313169 - 30313229
Alignment:
Q  216 attgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaaca 276  Q
    ||||||||||| ||| ||  |||||||||||||||| | ||||||||||||||||||||||    
T  30313169 attgttgtgtgcaagcgtgtgttatatgtctcacatcggatagaaaagtggaggttgaaca 30313229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 33561616 - 33561539
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacc 295  Q
    ||||||||| |||||| ||||||||||  |||||   ||||||||||||||||| |||| ||||||| ||||| ||||    
T  33561616 tgttgtgtgcaagtgtgagttatatgttccacatcagatagaaaagtggaggttaaacactttataagtgagaggacc 33561539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 236 - 287
Target Start/End: Complemental strand, 29874170 - 29874119
Alignment:
Q  236 gttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattg 287  Q
    |||||||||| |||||   |||||||||||||||||||||| ||||||||||    
T  29874170 gttatatgtcccacatcagatagaaaagtggaggttgaacactttataattg 29874119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 30323455 - 30323537
Alignment:
Q  216 attgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacctat 298  Q
    ||||||||||| ||||||  |||||||||| || ||   |||||||| ||||||||||||| |||| || ||||| |||||||    
T  30323455 attgttgtgtgcaagtgtgtgttatatgtcccaaatcagatagaaaattggaggttgaacactttagaagtgagaggacctat 30323537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 962591 - 962668
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacc 295  Q
    |||||| || |||||| ||||||||||| ||||| | ||||||||||  ||||||||||  |||||| ||||| ||||    
T  962591 tgttgtatgcaagtgtgagttatatgtcccacatcggatagaaaagtaaaggttgaacaccttataagtgagaggacc 962668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 13154521 - 13154480
Alignment:
Q  243 gtctcacattgtatagaaaagtggaggttgaacaatttataa 284  Q
    |||||||||||  ||||||||||||||||||||| |||||||    
T  13154521 gtctcacattgcttagaaaagtggaggttgaacactttataa 13154480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 33953936 - 33953859
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacc 295  Q
    ||||||||| || ||| ||||||| ||| |||||   |||||||||||||||||||||| | ||||| ||||| ||||    
T  33953936 tgttgtgtgcaaatgtgagttataagtcccacatcagatagaaaagtggaggttgaacactatataagtgagaggacc 33953859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 284
Target Start/End: Complemental strand, 3594341 - 3594277
Alignment:
Q  220 ttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataa 284  Q
    ||||||| |||||| |||| ||||| |||||  | |||||||||||||||| ||||| |||||||    
T  3594341 ttgtgtgaaagtgtgagttgtatgtttcacaacgaatagaaaagtggaggtcgaacactttataa 3594277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 29873704 - 29873636
Alignment:
Q  216 attgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataa 284  Q
    ||||||||||| ||| ||  |||| ||||| |||||   |||||||||||||||||||||| |||||||    
T  29873704 attgttgtgtgcaagggtgtgttacatgtcccacatcagatagaaaagtggaggttgaacattttataa 29873636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 295
Target Start/End: Complemental strand, 41678534 - 41678455
Alignment:
Q  218 tgttgtgtgtaagtgtcagttatat--gtctcacattgtatagaaaagtggaggttgaacaatttataattgagaagacc 295  Q
    ||||||||| |||||| ||||||||  |||||||||   ||||||||| ||||||| |||| ||||||| ||||| ||||    
T  41678534 tgttgtgtgcaagtgtgagttatatatgtctcacatcagatagaaaaggggaggttaaacactttataagtgagaggacc 41678455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 290
Target Start/End: Original strand, 39828 - 39903
Alignment:
Q  215 aattgttgtgtgtaagtgtcagttatatgtctcacattgtatagaaaagtggaggttgaacaatttataattgaga 290  Q
    |||||||||||  |||||| ||||||||||| ||||| | |||||||||||| ||||| ||  ||||||| |||||    
T  39828 aattgttgtgttcaagtgtgagttatatgtcccacatcggatagaaaagtggtggttggactctttataagtgaga 39903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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