View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10959_high_18 (Length: 327)

Name: NF10959_high_18
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10959_high_18
NF10959_high_18
[»] chr1 (1 HSPs)
chr1 (19-312)||(37445286-37445579)


Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 312
Target Start/End: Original strand, 37445286 - 37445579
Alignment:
Q  19 gaaatgttttgccaatgtatttcaatcttttcctttaaaccatcacgcaatatctcccacaccaattttcgtttagcataataaaacttagctaccaaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37445286 gaaatgttttgccaatgtatttcaatcttttcctttaaaccatcacgcaatatctcccacaccaattttcgtttagcataataaaacttagctaccaaat 37445385  T
Q  119 ccgcaggatatttagcctcaatctgcatgcgcagcatgtaatatgagacaaatattttattatataataaaaaacctcgaatattgtggggtttttagaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  37445386 ccgcaggatatttagcctcaatctgcatgcgcagcatgtaatatgagacaaatattttattatataataaaaaacctcgaatattttgggatttttagaa 37445485  T
Q  219 atacttaattaatttgactattatacaagtcaaatattatatactagaagtaatagttagtacagtaatatataccttaaaaaacccaatgatg 312  Q
    | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  37445486 acacttaattaatttgactattatacaagtcaaatattatatactagtagtaatagttagtacagtaatatataccttaaaaaacccaatgatg 37445579  T

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