View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_high_20 (Length: 314)
Name: NF10959_high_20
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 2 - 304
Target Start/End: Complemental strand, 31252205 - 31251903
Alignment:
| Q |
2 |
tatttttgattgattcaaccatcaaaggaacttgctctcgtagttctgtaatattttgagaaagatgataaaaaatatcatttccaccaatctctcccac |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31252205 |
tatttttgattgattcaaccatcaaaggaactttctctcgtagttctgtaatagttttagaaagatgataaaaaatatcatttccaccaatctctcccac |
31252106 |
T |
|
| Q |
102 |
tataaacaatgagtttttgaagaagctgtcacattctgtgaactcatnnnnnnncaaaagttttgttagtcatatagatgataaaccatttatatcacac |
201 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31252105 |
tataaacaatgagtttttgaagaagctgtcacattctgtgaactcataaaaaaacaaaagttttgttagtcatatagatgataaaccatttatatcacac |
31252006 |
T |
|
| Q |
202 |
aaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttcttaaaccaatcaaattgcacatttaatgattcct |
301 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31252005 |
aaaaataacatgtaaggatttaggacaaaaccttctttacttttacataagtcgggttttagcttcttaaaccaatcaaattgcacatttaatgattcct |
31251906 |
T |
|
| Q |
302 |
ttg |
304 |
Q |
| |
|
||| |
|
|
| T |
31251905 |
ttg |
31251903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 2 - 304
Target Start/End: Original strand, 13003381 - 13003683
Alignment:
| Q |
2 |
tatttttgattgattcaaccatcaaaggaacttgctctcgtagttctgtaatattttgagaaagatgataaaaaatatcatttccaccaatctctcccac |
101 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13003381 |
tatttttgattgattcaaccatcaaaggaactttctctcgtagttctttaatagttttagaaagatgataaaaaatatcatttccaccaatctctcccac |
13003480 |
T |
|
| Q |
102 |
tataaacaatgagtttttgaagaagctgtcacattctgtgaactcatnnnnnnncaaaagttttgttagtcatatagatgataaaccatttatatcacac |
201 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13003481 |
tataaacaatgattttttgaagaagctgtcacattctgtgaactcataaaaaaacaaaagttttgttagtcatatagatgataaaccatttatatcacac |
13003580 |
T |
|
| Q |
202 |
aaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttcttaaaccaatcaaattgcacatttaatgattcct |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13003581 |
aaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttcttaaaccaatcaaattgcacatctaatgattcct |
13003680 |
T |
|
| Q |
302 |
ttg |
304 |
Q |
| |
|
||| |
|
|
| T |
13003681 |
ttg |
13003683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 2 - 296
Target Start/End: Original strand, 31094175 - 31094472
Alignment:
| Q |
2 |
tatttttgattgattcaaccatcaaaggaacttgctctcgtagttctgtaata-ttttgagaaagatgataaaaaatatcatttccaccaatctctccca |
100 |
Q |
| |
|
||||||||||||| ||||| ||||| |||||| |||| | |||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
31094175 |
tatttttgattgaatcaactatcaagggaactatctcttgcagttctgtaatagttttga-aaagatggtaaaaaatatcatttccaccaatctctccca |
31094273 |
T |
|
| Q |
101 |
ctataaacaatgagtttttgaagaagctgtcacattctgtgaactcatnnnnnnncaaaa---gttttgttagtcatatagatgataaaccatttatatc |
197 |
Q |
| |
|
|||||||||| || |||||||||||||| |||||||||||||||||| |||| |||||||||||||||| ||||||||| |||||||||| |
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| T |
31094274 |
ctataaacaacgattttttgaagaagctatcacattctgtgaactcacaagaagaaaaaaaaagttttgttagtcatattgatgataaatcatttatatc |
31094373 |
T |
|
| Q |
198 |
acacaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttcttaaaccaatcaaattgcacatttaatga |
296 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
31094374 |
acacaaaaataacaagcaaggagttaggacaaaaccttctttgtttttacacaataagggttttagcttcttaaaccaatcaaattgcacaattaatga |
31094472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 4 - 286
Target Start/End: Complemental strand, 27206266 - 27205984
Alignment:
| Q |
4 |
tttttgattgattcaaccatcaaaggaacttgctctcgtagttctgtaatattttgagaaagatgataaaaaatatcatttccaccaatctctcccacta |
103 |
Q |
| |
|
||||| ||||| ||||| ||||| ||||| |||||| |||||||||||| ||| |||||||| | |||| ||||||| ||||||||||||||||| |
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|
| T |
27206266 |
tttttaattgactcaacgatcaagggaaccatctctcgcagttctgtaatagttttagaaagatcgaataaaacgtcatttctaccaatctctcccacta |
27206167 |
T |
|
| Q |
104 |
taaacaatgagtttttgaagaagctgtcacattctgtgaactcatnnnnnnncaaaagttttgttagtcatatagatgataaaccatttatatcacacaa |
203 |
Q |
| |
|
|||||| | |||||||||||||| |||||||||||||||||| |||| |||||||||||||| || | || |||| |||||| ||| |||| |
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|
| T |
27206166 |
caaacaacaattttttgaagaagctatcacattctgtgaactcacaacaaaacaaatgttttgttagtcatgtacacgaaaaacaatttatttcaaacaa |
27206067 |
T |
|
| Q |
204 |
aaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttcttaaaccaatcaaattgca |
286 |
Q |
| |
|
||||| ||||| ||| ||||||||||||||||||| ||||||| | |||||| ||||||||||||||||||||||||| |
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|
| T |
27206066 |
aaatagtatgcagggagttaggacaaaaccttctttagttttacacgatgagggtttaagcttcttaaaccaatcaaattgca |
27205984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 16162918 - 16162788
Alignment:
| Q |
10 |
attgattcaaccatcaaaggaacttgctctcgtagttctgtaatattttgagaaagatgataaaaaatatcatttccaccaatctctcccactataaaca |
109 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| |||||||||||| ||| ||||| ||| |||||| ||||||||||||||| |||||||||||||| | |
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|
| T |
16162918 |
attgattcaacaatcaagggaacaatttctcgcagttctgtaatagttttagaaatatgtaaaaaaacatcatttccaccaatttctcccactataaata |
16162819 |
T |
|
| Q |
110 |
atgagtttttgaagaagctgtcacattctgt |
140 |
Q |
| |
|
|||| |||||||||||| ||||| ||||| |
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|
| T |
16162818 |
atgatcgtttgaagaagctatcacactctgt |
16162788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 25658257 - 25658207
Alignment:
| Q |
78 |
atcatttccaccaatctctcccactataaacaatgagtttttgaagaagct |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
25658257 |
atcattcccaccaatctctcccactataaacaatgattttttgaagtagct |
25658207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 25664662 - 25664612
Alignment:
| Q |
78 |
atcatttccaccaatctctcccactataaacaatgagtttttgaagaagct |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
25664662 |
atcattcccaccaatctctcccactataaacaatgattttttgaagtagct |
25664612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 25671067 - 25671017
Alignment:
| Q |
78 |
atcatttccaccaatctctcccactataaacaatgagtttttgaagaagct |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
25671067 |
atcattcccaccaatctctcccactataaacaatgattttttgaagtagct |
25671017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 25677472 - 25677422
Alignment:
| Q |
78 |
atcatttccaccaatctctcccactataaacaatgagtttttgaagaagct |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
25677472 |
atcattcccaccaatctctcccactataaacaatgattttttgaagtagct |
25677422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 128
Target Start/End: Complemental strand, 25684146 - 25684096
Alignment:
| Q |
78 |
atcatttccaccaatctctcccactataaacaatgagtttttgaagaagct |
128 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
25684146 |
atcattcccaccaatctctcccactataaacaatgattttttgaagtagct |
25684096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 296
Target Start/End: Complemental strand, 27228810 - 27228714
Alignment:
| Q |
200 |
acaaaaataacatgcaaggatttaggacaaaaccttctttgcttttacataagtcgggttttagcttcttaaaccaatcaaattgcacatttaatga |
296 |
Q |
| |
|
|||||||||| | ||||| | ||| |||||||||||||| |||||||| || ||||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
27228810 |
acaaaaataatacgcaagtagttatgacaaaaccttcttcacttttacacaatgatggttttatattcttaaaccattcaaattgcacatttaatga |
27228714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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