View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10959_high_21 (Length: 309)
Name: NF10959_high_21
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_high_21 |
 | |
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| [»] scaffold0112 (1 HSPs) |
| | |
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| [»] scaffold0093 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 7643222 - 7642932
Alignment:
| Q |
1 |
tggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7643222 |
tggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattt |
7643123 |
T |
|
| Q |
101 |
tttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttgga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7643122 |
tttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttgga |
7643023 |
T |
|
| Q |
201 |
agcatataaatttcaagttttgacaagatgtcacagaaacatgtacttatgtagtagatcgagcttgtaaccttatggagttagtcgaaac |
291 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
7643022 |
agcatagaaatttcaagttttgacaggatgtcacagaaacatgtactcatgtagtagatcgagcttgtaaccttatggagctagtcgaaac |
7642932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 20250718 - 20250945
Alignment:
| Q |
17 |
cttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcag |
116 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||| || ||||||||| || |||||| |||||||||||||||||||||| ||| | |||| ||||||| |
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|
| T |
20250718 |
cttgcacatatttgttttgagtgtccttttactgtgcaggtttggcgtaagattggcctttggaatgtggttcatgaggtgtttctcaaaaagaattcag |
20250817 |
T |
|
| Q |
117 |
cagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaa |
216 |
Q |
| |
|
||||||||||||||||| ||| | | |||||||| |||| |||| |||||||| ||||||||||| ||| | ||||||||| ||||||| |||| |||| |
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|
| T |
20250818 |
cagttgatgccattttcgaattgctacatcagctttcgcaagaacttggtcaacgatttgcagctaccctttggagcctttgaaagcatagaaatctcaa |
20250917 |
T |
|
| Q |
217 |
gttttgacaagatgtcacagaaacatgt |
244 |
Q |
| |
|
|||| ||||| | |||| |||||||| |
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|
| T |
20250918 |
actttggcaagagggcacaaaaacatgt |
20250945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 23 - 280
Target Start/End: Original strand, 26131123 - 26131379
Alignment:
| Q |
23 |
catatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaat-aattcagcagtt |
121 |
Q |
| |
|
||||||||||| ||||||| ||||| | || ||||||||||||||||||| |||||||||| ||||||||||| ||| || |||| |||||| | || |
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|
| T |
26131123 |
catatttgttttgagtgtccttttaatttgcaggtttggcatatgattggcctttggaatgcggttcatgaggtgtttcttaaaaaagaattca--aatt |
26131220 |
T |
|
| Q |
122 |
gatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaagtttt |
221 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||||| |||| |||||||| |||||||||||||||| | ||||||||||||||||| |||| |||| ||| |
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|
| T |
26131221 |
gatgccattttcgaattgttacatcagctctcgcaagaacttggtcaacgatttgcagctgtcctttggagcctttggaagcatagaaatctcaaacttt |
26131320 |
T |
|
| Q |
222 |
gacaagatgtcacagaaacatgtacttatgtagtagatcgagcttgtaaccttatggag |
280 |
Q |
| |
|
| ||||| | ||||||||||||| || |||||||||||||||||||| ||||||||||| |
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|
| T |
26131321 |
ggcaagaggccacagaaacatgtgctcatgtagtagatcgagcttgtcaccttatggag |
26131379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 43218901 - 43218652
Alignment:
| Q |
17 |
cttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcag |
116 |
Q |
| |
|
||||| ||||||||||| ||||||| ||||||| || ||||||||| || |||||| |||||||||||||||||||||| ||| | ||||| ||||||| |
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|
| T |
43218901 |
cttgcacatatttgttttgagtgtccttttactgtgcaggtttggcgtaagattggcctttggaatgtggttcatgaggtgtttctcgaaaagaattcag |
43218802 |
T |
|
| Q |
117 |
cagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaa |
216 |
Q |
| |
|
||||||||||||||||| ||| | | ||||||||||||| |||| |||||||| ||||||||||| ||| | |||||||||| |||||| |||| |||| |
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|
| T |
43218801 |
cagttgatgccattttcgaattgctacatcagctctcgcaagaacttggtcaacgatttgcagctaccctttggagcctttgggagcatagaaatctcaa |
43218702 |
T |
|
| Q |
217 |
gttttgacaagatgtcacagaaacatgtacttatgtagtagatcgagctt |
266 |
Q |
| |
|
|||| ||||| |||| |||||| | || |||||||||||| |||| |
|
|
| T |
43218701 |
actttggcaagagaccacataaacatatgctcttgtagtagatcgggctt |
43218652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 280
Target Start/End: Complemental strand, 41418513 - 41418390
Alignment:
| Q |
157 |
agaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaagttttgacaagatgtcacagaaacatgtacttatgtagta |
256 |
Q |
| |
|
||||||| |||||| ||||||| ||||||| | ||||||||||||||||| |||| ||||| |||| ||||||||||||||||| ||| || ||||||| |
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|
| T |
41418513 |
agaatttagtcaataatttgcaactgtcctatggagcctttggaagcatagaaatctcaagctttggcaagatgtcacagaaacttgtgctcatgtagtc |
41418414 |
T |
|
| Q |
257 |
gatcgagcttgtaaccttatggag |
280 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
41418413 |
gatcgagcttgtcaccttatggag |
41418390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0112 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0112
Description:
Target: scaffold0112; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 33818 - 34081
Alignment:
| Q |
17 |
cttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcag |
116 |
Q |
| |
|
||||||||||||||||| || |||| ||||||| || ||||||||| || | |||||||||||| |||||||||| | ||| ||||||| |||| || |
|
|
| T |
33818 |
cttgctcatatttgtttagaatgtccttttactgtgcaggtttggcgtacaaccggtctttggaatatggttcatgatgtgtttcttgaaaagaatttag |
33917 |
T |
|
| Q |
117 |
cagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaa |
216 |
Q |
| |
|
||| ||||||||| ||| ||| | | ||||| || || | ||||||| ||||| |||||||| |||||| | ||||||||||||||||| |||| |||| |
|
|
| T |
33918 |
cagctgatgccatattcgaattgctacatcaactttcacaagaatttagtcaacgatttgcaattgtcctatggagcctttggaagcatagaaatctcaa |
34017 |
T |
|
| Q |
217 |
gttttgacaagatgtcacagaaacatgtacttatgtagtagatcgagcttgtaaccttatggag |
280 |
Q |
| |
|
|||| |||||||||||| |||| ||| || ||||||| |||||||||||| ||||||||||| |
|
|
| T |
34018 |
cctttggcaagatgtcacataaacttgtgctcatgtagtcgatcgagcttgtcaccttatggag |
34081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 8789717 - 8789979
Alignment:
| Q |
17 |
cttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcag |
116 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||| || ||||||||| || | | |||||||||| ||||||||||| ||| ||||||| |||||| |
|
|
| T |
8789717 |
cttgctcatatttgtttcaaatgtccttttactgtgcaggtttggcgtacaaccgatctttggaatacggttcatgaggtgtttcttgaaaagaattcaa |
8789816 |
T |
|
| Q |
117 |
cagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaa |
216 |
Q |
| |
|
| | ||||||||| ||| ||| | | ||||| || || | | |||| | |||| |||||||| ||||||| | || |||||||||||||| |||| |||| |
|
|
| T |
8789817 |
ccgctgatgccatattcgaattgctacatcaactttcacaaaaattag-tcaacgatttgcaactgtcctatggatcctttggaagcatagaaatctcaa |
8789915 |
T |
|
| Q |
217 |
gttttgacaagatgtcacagaaacatgtacttatgtagtagatcgagcttgtaaccttatggag |
280 |
Q |
| |
|
| |||| |||||||||||| |||| ||| || ||||||| |||||||||||| ||||||||||| |
|
|
| T |
8789916 |
gctttggcaagatgtcacataaacttgtgctcatgtagtcgatcgagcttgtcaccttatggag |
8789979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 15617477 - 15617725
Alignment:
| Q |
32 |
ttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcagcagttgatgccattt |
131 |
Q |
| |
|
|||||||||| ||| |||||| ||||||||| || | | ||||||||||||||||| | || || ||| | ||||| ||||||| |||||||||||| | |
|
|
| T |
15617477 |
ttcgagtgtcctttaactatgcaggtttggcgtagggctcgtctttggaatgtggttaacgaagcgtttctcgaaaagaattcagtagttgatgccatct |
15617576 |
T |
|
| Q |
132 |
tcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaagttttgacaagatgt |
231 |
Q |
| |
|
| ||| || ||| ||||||||| |||||||| ||| || |||||||| |||||| ||||||| |||||||| |||| | || |||| |||||||| |
|
|
| T |
15617577 |
ttgaattgtcacataagctctcgcaagaatttgaccaacgagttgcagctatcctctagagccttcagaagcatagaaatcttaaactttggcaagatgt |
15617676 |
T |
|
| Q |
232 |
cacagaaacatgtacttatgtagtagatcgagcttgtaaccttatggag |
280 |
Q |
| |
|
|||| |||||||| || | ||||||| ||||||||| ||| ||||||| |
|
|
| T |
15617677 |
cacataaacatgtgctcagatagtagaccgagcttgtcaccatatggag |
15617725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 17183 - 16933
Alignment:
| Q |
18 |
ttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcagc |
117 |
Q |
| |
|
|||||||||||||||| || |||| ||||||| || |||||||| || | || |||||||| |||||||||||| ||| ||||||| || | ||| |
|
|
| T |
17183 |
ttgctcatatttgtttagaatgtccttttactgtgcaggtttggtgtacaaccagtatttggaatatggttcatgaggtgtttcttgaaaagaaattagc |
17084 |
T |
|
| Q |
118 |
agttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaag |
217 |
Q |
| |
|
|| ||||||||| ||||||| | | ||||| || || | ||||||| ||||| ||||||| |||||| | |||||||||||||||| |||| ||||| |
|
|
| T |
17083 |
agctgatgccatattcaaattgctacatcaactttcacaagaatttagtcaacaatttgcaattgtcctatttagcctttggaagcatagaaatctcaag |
16984 |
T |
|
| Q |
218 |
ttttgacaagatgtcacagaaacatgtacttatgtagtagatcgagcttgt |
268 |
Q |
| |
|
|||| ||| | ||||| |||| ||| || |||| || |||||||||||| |
|
|
| T |
16983 |
ctttggcaaaacatcacataaacttgtgctcatgttgtcgatcgagcttgt |
16933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 280
Target Start/End: Original strand, 51748421 - 51748596
Alignment:
| Q |
104 |
gaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagc |
203 |
Q |
| |
|
|||||||| |||||| |||||||||||||| ||| ||| ||||| | ||| ||| ||| |||| ||||||| |||||| | |||||||| ||||| |
|
|
| T |
51748421 |
gaaaataactcagca-ttgatgccattttcgaattgttacatcaattttcgtaagatcttgatcaacaatttgcatatgtcctttggagcctttcgaagc |
51748519 |
T |
|
| Q |
204 |
atataaatttcaagttttgacaagatgtcacagaaacatgtacttatgtagtagatcgagcttgtaaccttatggag |
280 |
Q |
| |
|
||| |||| |||| | | ||||||| |||| |||||| | | ||||||||||||||| |||| ||||||||||| |
|
|
| T |
51748520 |
atagaaatctcaaacctaggcaagatgccacaaaaacatatgttcatgtagtagatcgagtttgtcaccttatggag |
51748596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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