View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10959_high_22 (Length: 297)

Name: NF10959_high_22
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10959_high_22
NF10959_high_22
[»] chr5 (1 HSPs)
chr5 (11-297)||(9221996-9222281)


Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 9221996 - 9222281
Alignment:
Q  11 cagagacaagaacttgacaagataagttagtttaatattcaaaacttgaaataatccgaataattatttggtcnnnnnnnnnnnnnnnnttctcctattc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||    
T  9221996 cagagacaagaacttgacaagataagttagtttaatattcaaaacttgaaataatccgaataattatttggtcaaaaaaatccaaaaaattctcctattc 9222095  T
Q  111 aagaaagacgatcacaccaatcccatacaagtacaattattgcaagcagacaaacccaaaaccacaccatcgcgaccatggtttccttaaccaataacca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||    
T  9222096 aagaaagacgatcacaccaatcccatacaagtacaattattgcaagcagacaaacacaaa-ccacactatcgcgaccatggtttccttaaccaataacca 9222194  T
Q  211 taattaaaatcaaaacaaacacgattaactaacgcgtaaaccatatccatccaaatcgtaccatcgtacggctaggatcgcatctgc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9222195 taattaaaatcaaaacaaacacgattaactaacgcgtaaaccatatccatccaaatcgtaccatcgtacggctaggatcgcatctgc 9222281  T

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