View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_high_25 (Length: 268)
Name: NF10959_high_25
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 52599948 - 52600167
Alignment:
| Q |
1 |
caaggtaatatgataaaacttcataaaaagtttaccacaaaatataaagtaaagtcaaattgtttttataaactttacttaagaattgatggaaataaac |
100 |
Q |
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| T |
52599948 |
caaggtaatatgataaaacttcataaaaagtttaccacaaaatataaagtaaagtcaaattgtttttataaactttacttaagaattgatggaaataaac |
52600047 |
T |
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| Q |
101 |
tgaaaacaac----------ttaaaaaactattttcataagctcttcagacttgcaagcgtttaagcagtggataaaaataaccatggttgtgcttacat |
190 |
Q |
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| T |
52600048 |
tgaaaacaacttatggacgtttaaaaaactattttcataagctcttcagacttgcaagcgtttaagcagtggataaaaataaccatggttgtgcttac-- |
52600145 |
T |
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| Q |
191 |
atataatattcaaacaagcctaaa |
214 |
Q |
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|||||||||||||||||||||| |
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| T |
52600146 |
--ataatattcaaacaagcctaaa |
52600167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 52600189 - 52600223
Alignment:
| Q |
217 |
actatttaatgcttacatagcaacatatataattt |
251 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
52600189 |
actatttaatgcttaaatagcaacatatataattt |
52600223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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