View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10959_high_28 (Length: 240)
Name: NF10959_high_28
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_high_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 13003387 - 13003163
Alignment:
| Q |
1 |
aaaaatatcaccaatgtatgttacacaaatcttaagtaattaaatgattacgtattagcnnnnnnntaaataactgttgacttcaattgtagaataattg |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
13003387 |
aaaaataccaccaatgtatgttatacaaatcttaagtaattaaatgtttacgtattagcaaaaaa-taaataacttttgacttcaattgtagaataattg |
13003289 |
T |
|
| Q |
101 |
tgtttaagttataggtaatattgaataaataatggtcttggaaaattgtaatagatatttatttaattatgtttgtcaggctttaattgaagaaggagcg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13003288 |
tgtttaagttataggtaatattgaataaataatggtcttggaaaaatgtaatagatatttatttaattatgtttgtcaggctttaattgaagaaggagcg |
13003189 |
T |
|
| Q |
201 |
gtggagctagtggttccagggaactt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
13003188 |
gtggagctagtggttccagggaactt |
13003163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 31252199 - 31252423
Alignment:
| Q |
1 |
aaaaatatcaccaatgtatgttacacaaatcttaagtaattaaatgattacgtattagcnnnnnnntaaataactgttgacttcaattgtagaataattg |
100 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
31252199 |
aaaaataccaccaatgtatgttatacaaatcttaagtaattaaatgtttacgtattagcaaaaaa-taaataacttttgacttcaattgtagaataattg |
31252297 |
T |
|
| Q |
101 |
tgtttaagttataggtaatattgaataaataatggtcttggaaaattgtaatagatatttatttaattatgtttgtcaggctttaattgaagaaggagcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31252298 |
tgtttaagttataggtaatattgaataaataatggtcttggaaaattgtaatggatatttatttaattatgtttgtcaggctttaattgaagaaggagcg |
31252397 |
T |
|
| Q |
201 |
gtggagctagtggttccagggaactt |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
31252398 |
gtggagctagtggttccagggaactt |
31252423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 31094181 - 31093963
Alignment:
| Q |
1 |
aaaaatatcaccaatgtatgttacacaaatcttaagtaattaaatgattacgtattagcnnnnnnntaaataactgttgacttcaattgtagaataattg |
100 |
Q |
| |
|
||||||| ||||| ||||||||| ||||| |||||||||||||||| | | ||||| || ||| || ||| |||||||||||||| |||| |
|
|
| T |
31094181 |
aaaaataccaccattgtatgttatacaaaacttaagtaattaaatgttgaagtattggca-------aaaaaaaagtttacttcaattgtagatatattg |
31094089 |
T |
|
| Q |
101 |
tgtttaagttataggtaatattgaataaataatggtcttggaaaattgtaatagatatttatttaattatgtttgtcaggctttaattgaagaaggagcg |
200 |
Q |
| |
|
||||| ||||||||||| |||| ||||||||| ||||||||||| |||||||| |||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
31094088 |
tgtttgagttataggtattattaaataaataacagtcttggaaaaaagtaatagagatttatttaattatgtatatcaggctttaattgaagaaggagcg |
31093989 |
T |
|
| Q |
201 |
gtggagctagtggttccagggaactt |
226 |
Q |
| |
|
|| |||||||||||| |||| ||||| |
|
|
| T |
31093988 |
gttgagctagtggtttcaggaaactt |
31093963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 226
Target Start/End: Original strand, 16162964 - 16163113
Alignment:
| Q |
75 |
tgttgacttcaattgtagaataattgtgtttaagttataggtaatattgaataaataatggtcttggaaaattgtaatagatatttatttaattatgttt |
174 |
Q |
| |
|
|||| ||||||| | ||||||||| |||||||||||||| | |||||||| ||||||| | | | |||| |||||||| |||||||||||| | || |
|
|
| T |
16162964 |
tgtttacttcaactctagaataatcatgtttaagttatagattatattgaa-aaataataatat-gaaaaaatgtaatagtgatttatttaatttttctt |
16163061 |
T |
|
| Q |
175 |
gtcaggctttaattgaagaaggagcggtggagctagtggttccagggaactt |
226 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
16163062 |
atcaggcattaattgaagaaggagcggttgagctagtggttccaggtaactt |
16163113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 226
Target Start/End: Original strand, 27206363 - 27206450
Alignment:
| Q |
139 |
tggaaaattgtaatagatatttatttaattatgtttgtcaggctttaattgaagaaggagcggtggagctagtggttccagggaactt |
226 |
Q |
| |
|
||||||| |||||||| |||||||||||| ||||| |||||||||||||||||||||||||| ||| | |||||| ||||||||| |
|
|
| T |
27206363 |
tggaaaaatgtaatagtcatttatttaattttgtttcacaggctttaattgaagaaggagcggtagagttggtggttttagggaactt |
27206450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 226
Target Start/End: Original strand, 27228967 - 27229110
Alignment:
| Q |
81 |
cttcaattgtagaataattgtgtttaagttataggtaatattgaataaataatggtcttggaaaattgtaatagatatttatttaattatgtttgtcagg |
180 |
Q |
| |
|
||||||||||| ||||||| | ||| |||||||| | || |||||||||||| ||||||| || | |||||| ||||| |||||||||||| ||| |
|
|
| T |
27228967 |
cttcaattgtataataattctttttgagttatagat--tagtgaataaataataatcttggataaatataatagtcatttaattaattatgttttctagg |
27229064 |
T |
|
| Q |
181 |
ctttaattgaagaaggagcggtggagctagtggttccagggaactt |
226 |
Q |
| |
|
| || |||||||||||||| | || |||||||||||||| ||||| |
|
|
| T |
27229065 |
cattgattgaagaaggagcaatagaactagtggttccaggaaactt |
27229110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University