View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_high_32 (Length: 230)
Name: NF10959_high_32
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 212
Target Start/End: Original strand, 26732706 - 26732900
Alignment:
| Q |
18 |
agaccaagaactagaaaattactcaaatactcacccctagattaataaaactttcatctcccacgcttgtacatttatctttttctttacaaaatcaaaa |
117 |
Q |
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| T |
26732706 |
agaccaagaactagaaaattactcaaatactcacccctagattaataaaactttcatctcccacgcttttgcatttatctttttctttacaaaatcaaaa |
26732805 |
T |
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| Q |
118 |
accatcatatttcttcaattcacaactttaggctagttacacgtaaatgtaacgctctcgaatgcttacatgattgccaattgaccgcacaaacc |
212 |
Q |
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| T |
26732806 |
accatcatatttcttcaattcacaactttaggctagttacacgtaaatgtaacgctctcgaatgcttacatgattgccaattgaccgcacaaacc |
26732900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 31 - 212
Target Start/End: Original strand, 26696782 - 26696963
Alignment:
| Q |
31 |
gaaaattactcaaatactcacccctagattaataaaactttcatctcccacgcttgtacatttatctttttctttacaaaatcaaaaaccatcatatttc |
130 |
Q |
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|||||||||||| | |||||||||| ||||||||||| ||||||||||||| |||| |||||||||||||||||||| ||| ||||||||| || |||| |
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| T |
26696782 |
gaaaattactcagaaactcacccctggattaataaaattttcatctcccacatttgtgcatttatctttttctttacataataaaaaaccatgatgtttc |
26696881 |
T |
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| Q |
131 |
ttcaattcacaactttaggctagttacacgtaaatgtaacgctctcgaatgcttacatgattgccaattgaccgcacaaacc |
212 |
Q |
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| T |
26696882 |
ttcaattcacaactttaggctagttacacgtaaatgtaacgctctcaaatgttttcaggattgtcaaatgaccccacaaacc |
26696963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 114 - 212
Target Start/End: Original strand, 26691404 - 26691502
Alignment:
| Q |
114 |
aaaaaccatcatatttcttcaattcacaactttaggctagttacacgtaaatgtaacgctctcgaatgcttacatgattgccaattgaccgcacaaacc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26691404 |
aaaaaccatcatatttcttcaattcacaactttaggctagttacacgtaaatgtaacgctctcgaatgcttacatgattgccaattgaccgcacaaacc |
26691502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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