View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_high_34 (Length: 222)
Name: NF10959_high_34
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 44728577 - 44728475
Alignment:
| Q |
107 |
aagaaaccttacaagtattcttctcctcctccaccatatgtccaccctaaaccttactaccattctccaccacccccaaagaaaccatataaatattctt |
206 |
Q |
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| T |
44728577 |
aagaaaccttacaagtattcttctcctcctccaccatatgtccaccctaaaccttactaccattctccaccacccccaaagaaaccatacaaatattctt |
44728478 |
T |
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| Q |
207 |
ctc |
209 |
Q |
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||| |
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| T |
44728477 |
ctc |
44728475 |
T |
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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 209
Target Start/End: Complemental strand, 44728499 - 44728393
Alignment:
| Q |
107 |
aagaaaccttacaagtattcttctcctcctccaccat---atgtcca-ccctaaaccttactaccattctccaccacccccaaagaaaccatataaatat |
202 |
Q |
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|||||||| ||||| |||||||||||||| |||||| |||| | ||||||||||||||||||||| |||||||| |||||||| ||||| |||||| |
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| T |
44728499 |
aagaaaccatacaaatattcttctcctccaccaccagtgcatgttaagccctaaaccttactaccattccccaccaccaccaaagaagccatacaaatat |
44728400 |
T |
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| Q |
203 |
tcttctc |
209 |
Q |
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|| |||| |
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| T |
44728399 |
tcctctc |
44728393 |
T |
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