View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_high_35 (Length: 212)
Name: NF10959_high_35
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 3818962 - 3819145
Alignment:
| Q |
14 |
catcagaagccatgtaataattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgcttacaaattgcagcgtaaacacaaatagt |
113 |
Q |
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| T |
3818962 |
catcagaagccatgtagtaattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgcttacaaattgcagcgtaaacacaaatagt |
3819061 |
T |
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| Q |
114 |
tccaataatattcatcatactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttctt |
197 |
Q |
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| T |
3819062 |
tccaatgatattcatcatactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttctt |
3819145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 14 - 207
Target Start/End: Complemental strand, 47338915 - 47338722
Alignment:
| Q |
14 |
catcagaagccatgtaataattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgcttacaaattgcagcgtaaacacaaatagt |
113 |
Q |
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| T |
47338915 |
catcagaagccatgtagtaattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgcttacaaattgcagcgtaaacacaaatagt |
47338816 |
T |
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| Q |
114 |
tccaataatattcatcatactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttcttctctgcttct |
207 |
Q |
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| T |
47338815 |
tccaatgatattcatcatactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacgccttctttcttccctgtttct |
47338722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 47349924 - 47349741
Alignment:
| Q |
14 |
catcagaagccatgtaataattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgcttacaaattgcagcgtaaacacaaatagt |
113 |
Q |
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| T |
47349924 |
catccgaagccatataataactctcccaagctctcttggtaccgggaaatttcaaagaaatgtgttcatgcttgcaaattgcagcgtaaaggcaaagcgt |
47349825 |
T |
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| Q |
114 |
tccaataatattcatcatactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttctt |
197 |
Q |
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| T |
47349824 |
gccaacaacattcatcaaactgtaaggtgagaatccaaagatgagaaggggtctatgaacagaccaactcaaaccctctttctt |
47349741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 47347385 - 47347202
Alignment:
| Q |
14 |
catcagaagccatgtaataattctcccaagctaacttagtccctggaaatctcaacggaacaccctcatgcttacaaattgcagcgtaaacacaaatagt |
113 |
Q |
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| T |
47347385 |
catcagaagccacagaataagactcccaagctccctttgtaccgggaaatttcaacggaacaccttcgtgcttgcaaattgcagcataaacacaaagtgt |
47347286 |
T |
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| Q |
114 |
tccaataatattcatcatactgtaaggtgaaaatccaaagatgagaagtggcctatgaacagaccaactcacaccttctttctt |
197 |
Q |
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|||| | |||||||| ||| ||||||||||||||||| || | | || ||||||||||||||||||| ||| |||||||| |
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| T |
47347285 |
accaacgagattcatcaaactataaggtgaaaatccaaatataacttgaggtctatgaacagaccaactcaaaccctctttctt |
47347202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 5391155 - 5391240
Alignment:
| Q |
70 |
ggaacaccctcatgcttacaaattgcagcgtaaacacaaatagttccaataatattcatcatactgtaaggtgaaaatccaaagat |
155 |
Q |
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| T |
5391155 |
ggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
5391240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 5399874 - 5399959
Alignment:
| Q |
70 |
ggaacaccctcatgcttacaaattgcagcgtaaacacaaatagttccaataatattcatcatactgtaaggtgaaaatccaaagat |
155 |
Q |
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| T |
5399874 |
ggaagaccctcatgcttgcaaattgcagcgtaaacacaaagcgtgccaatgaggttcatcatgctgtaaggtgaaaatccaaagat |
5399959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 70 - 156
Target Start/End: Original strand, 5394693 - 5394779
Alignment:
| Q |
70 |
ggaacaccctcatgcttacaaattgcagcgtaaacacaaatagttccaataatattcatcatactgtaaggtgaaaatccaaagatg |
156 |
Q |
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| T |
5394693 |
ggaagaccctcatgcttgcaaattgcggcgtaaacacaaagcgtgccaatgacgttcatcatgctataaggtgaaaatccaaagatg |
5394779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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