View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_low_15 (Length: 349)
Name: NF10959_low_15
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 6848245 - 6847914
Alignment:
| Q |
1 |
caagaactaagaagatttatgaacttgtctagagcggccaattcgacattaggaaaatcgaatttatattaagtgaaaaatcatggaaaactacccttaa |
100 |
Q |
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| T |
6848245 |
caagaactaagaagatttatgaacttgtctagagcggccaattcgacattaggaaaatcgaatttatattaagtgaaaaatcatggaaaactacccttaa |
6848146 |
T |
|
| Q |
101 |
cctctaaaacttcattctctttacatacgnnnnnnnn--gtggaaaggattcctttatatacatttgttttttaattccacctctaaagaataggcttag |
198 |
Q |
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| T |
6848145 |
cctctaaaacttcattctctttacatacgttttttttttgtggaaaggattcctttatatacatttgttttttaattccacctctaaagaataggcttag |
6848046 |
T |
|
| Q |
199 |
cttctgtaacccatatagcatgcattttgtacctcactgtcatcattttctgttctaatcatatttcctttaagcctgtgcaattcagcctgcacctgat |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6848045 |
cttctgtaacccatatagcatgcattttgtacctcactgtcatcattttctgttctaatcatatttcctttaagcctgtgcaattcagcctgcacctgat |
6847946 |
T |
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| Q |
299 |
caaccttagggtgtgattgatctccagaagag |
330 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6847945 |
caaccttagggtgtgattgatctccagaagag |
6847914 |
T |
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