View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10959_low_17 (Length: 348)
Name: NF10959_low_17
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_low_17 |
 | |
|
| [»] chr4 (4 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 2842532 - 2842879
Alignment:
| Q |
1 |
gaacatcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttcatgttctgtattatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2842532 |
gaacatcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttcatgttctgtattatt |
2842631 |
T |
|
| Q |
101 |
cgtacaatcttgcttaacaataggtacagtactttcgatctgtgatggatcatcacatgtttcaaatgaaagtggcgagcttcgtttccattcactaagc |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2842632 |
ggtacaatcttgcttaacaataagtacagtactttcgatctgtgatggatcatcacatgtttcaaatgaaagtggcgagcttcgtttccattcactaagc |
2842731 |
T |
|
| Q |
201 |
cgcacctctgctgacttcgaatgcaactcgcaactttctgtcaaactcatttgcctataagtttcaagttccttttccnnnnnnngattctccctttccc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||| |
|
|
| T |
2842732 |
cgcacctctgctgacttcgaatgcaactcgcaactttctgtcaaactcatttgcctaaaagtttcaagttccttttccaaaaaaagattttccctttccc |
2842831 |
T |
|
| Q |
301 |
ttcttataagaatctcttgcataatattcatctcttcttcatcataag |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2842832 |
ttcttataagaatctcttgcataatattcatctcttcttcatcataag |
2842879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 253 - 348
Target Start/End: Original strand, 2838683 - 2838778
Alignment:
| Q |
253 |
gcctataagtttcaagttccttttccnnnnnnngattctccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataag |
348 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838683 |
gcctataactttcaagttccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataag |
2838778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 2838506 - 2838590
Alignment:
| Q |
1 |
gaacatcagactcagtatcataaaaggagctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttc |
85 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||| || ||| ||||||||| || | |||||| |||| |||||| |
|
|
| T |
2838506 |
gaacatcagactcagtatcataaaaggatctatgcatatcattgcacgcttgatccttgtgttgactgttttcctccacctcttc |
2838590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 2838645 - 2838679
Alignment:
| Q |
140 |
ctgtgatggatcatcacatgtttcaaatgaaagtg |
174 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
2838645 |
ctgtgatggatcatcacaagtttcaaatgaaagtg |
2838679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University