View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_low_19 (Length: 342)
Name: NF10959_low_19
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 11228924 - 11229209
Alignment:
| Q |
1 |
atttaacaatatgatattcctcccaaatatcatttgtaagtatactctcttcaaaactgaacaataaaaatttactcttgagcaaatgtttggtatcaca |
100 |
Q |
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| T |
11228924 |
atttaacaatatgatattcctcccaaatatcatttgtaagtatactctcttcaaaactgaacaataaaa-----ctcttgagcaaatgtttggtatcaca |
11229018 |
T |
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| Q |
101 |
ttgaaacaccataaacacgtagagatccaaacccatcaagatatttagaagttgggatattgatgaaatgtccaaagtgcaggagtttgtttaggagtcc |
200 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11229019 |
ttgaaacaccatacacacatagagatccaaacccatcaagatatttagaagtcgggatattgatgaaatgtccaaagtgcaggagtttgtttaggagtcc |
11229118 |
T |
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| Q |
201 |
tacaatggtctcagatcaatccgcaaaaaggagtatattcagttttgtatgaaaaatctaataaagtttgctccttgcagatatattgcat |
291 |
Q |
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|| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
11229119 |
tataatggtcccagataaatccgcaaaaaggagtatattcagttttgtatgaaaaatctattaaagtttgctccttgtagatatattgcat |
11229209 |
T |
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