View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_low_2 (Length: 769)
Name: NF10959_low_2
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 606; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 118 - 751
Target Start/End: Original strand, 35228045 - 35228678
Alignment:
| Q |
118 |
cttaaacaattggataagtgggaaccatagcaattccacatgaaccttccttggcatgcacgtctctcttaatcttgatatatcctttctcaccccattt |
217 |
Q |
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| T |
35228045 |
cttaaacaattggataagtgggaaccatagcaattccacatgaaccttccttggcatgcacgtctctcttaatcttgatatatcctttctcaccccattt |
35228144 |
T |
|
| Q |
218 |
agtaccccatgaatttttcactagccaatacttcacaccatcatcactggtgccataaccaactatagtcactgtatgatctaaataaattccacatttt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
35228145 |
agtaccccatgaatttttcactagccaatacttcacaccatcatcactggtaccataaccaactatagtaactgtatgatctaaatcaattccacatttt |
35228244 |
T |
|
| Q |
318 |
cctttcaaaattccacttgagtaaaattgaaaagcgcgttttgtcgcggcaatataaaccgctataggttgatttgccaccgcttttaagagcgcctttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35228245 |
cctttcaaaattccacttgagtaaaattgaaaagcgcgttttgtcgcggcgatataaaccgctataggttgatttgccaccgcttttaagagcgcctttt |
35228344 |
T |
|
| Q |
418 |
cattattggcgggaacatgctcatatcccttaattttagcaacattgtaggttcctttcctaacattgcatttaccatcaactcttgtataagggtaatt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35228345 |
cattattggcgggaacatgctcatatcccttaattttagcaacattgtaggttcctttcctaacattgcatttaccatcaacccttgtataagggtaatt |
35228444 |
T |
|
| Q |
518 |
tgtttcacttgttattcctccttttttaactatgaaatcacaagcatcttctacataaccaccattgcatccatcagttgtattagttttcacacaatcc |
617 |
Q |
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| T |
35228445 |
tgtttcacttgttattcctccttttttaactatgaaatcacaagcatcttctacataaccaccattgcatccatcagttgtattagttttgacacaatcc |
35228544 |
T |
|
| Q |
618 |
actagctcttgctcagagagtgatactaatcttcctgtggttatttgatgaataccttctattgcagccacaattgcaaatgcccaacaactacctataa |
717 |
Q |
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| T |
35228545 |
actagctcttgctcagagagtgatactaatcttcctgtggttatttgatgaataccttctattgcagccacagttgcaaatgcccaacaactacctataa |
35228644 |
T |
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| Q |
718 |
acaagaatcaacatcatcttaattagcataattt |
751 |
Q |
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| T |
35228645 |
acaagaatcaacatcatcttaattagcataattt |
35228678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 35227986 - 35228046
Alignment:
| Q |
18 |
aacactcacacacataactaattcaaacacaagcaattcatcaaactagtataagaagact |
78 |
Q |
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| T |
35227986 |
aacactcacacacataactaattcaaacacaagcaattcatcaaactagtataagaagact |
35228046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 651 - 716
Target Start/End: Original strand, 31176914 - 31176979
Alignment:
| Q |
651 |
cctgtggttatttgatgaataccttctattgcagccacaattgcaaatgcccaacaactacctata |
716 |
Q |
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| T |
31176914 |
cctgttgttatttggtggataccctctatggaagccacagttgaaaatgcccaacaactacctata |
31176979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 708
Target Start/End: Complemental strand, 29746586 - 29746533
Alignment:
| Q |
655 |
tggttatttgatgaataccttctattgcagccacaattgcaaatgcccaacaac |
708 |
Q |
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|||||||||| || |||||||||||||||||||| | | |||||||||||||| |
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| T |
29746586 |
tggttatttgttggataccttctattgcagccaccgtagaaaatgcccaacaac |
29746533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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