View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_low_20 (Length: 328)
Name: NF10959_low_20
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 2838506 - 2838821
Alignment:
| Q |
1 |
gaacatcagactcagtatcataaaaggatctatgcatatcattgcacacttgatccttgtgttgactgttttcctccacctcttctccatggtctgcatc |
100 |
Q |
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| T |
2838506 |
gaacatcagactcagtatcataaaaggatctatgcatatcattgcacgcttgatccttgtgttgactgttttcctccacctcttctccatggtctgcatc |
2838605 |
T |
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| Q |
101 |
agcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaaattccttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2838606 |
agcgcaatctttcttcacatttgatacgatgctttctgcctgtgatggatcatcacaagtttcaaatgaaagtgatggcctataactttcaagttccttt |
2838705 |
T |
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| Q |
201 |
tccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacctctcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2838706 |
tccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagctctttcttcaattaacctctcat |
2838805 |
T |
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| Q |
301 |
attgtctgatgtccat |
316 |
Q |
| |
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||||||| || ||||| |
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| T |
2838806 |
attgtctcatttccat |
2838821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 178 - 316
Target Start/End: Original strand, 2842784 - 2842922
Alignment:
| Q |
178 |
gcctataactttcaaattccttttccaaaaagagattctccttttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagcagc |
277 |
Q |
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||||| || |||||| ||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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| T |
2842784 |
gcctaaaagtttcaagttccttttccaaaaaaagattttccctttcccttcttataagaatctcttgcataatattcatctcttcttcatcataagaaac |
2842883 |
T |
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| Q |
278 |
tctttcttcaattaacctctcatattgtctgatgtccat |
316 |
Q |
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| T |
2842884 |
tctttcttcaattaacctctcgtattgtctcatttccat |
2842922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2842532 - 2842573
Alignment:
| Q |
1 |
gaacatcagactcagtatcataaaaggatctatgcatatcat |
42 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
2842532 |
gaacatcagactcagtatcataaaaggagctatgcaaatcat |
2842573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 174
Target Start/End: Original strand, 2842671 - 2842705
Alignment:
| Q |
140 |
ctgtgatggatcatcacaagtttcaaatgaaagtg |
174 |
Q |
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| T |
2842671 |
ctgtgatggatcatcacatgtttcaaatgaaagtg |
2842705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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