View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_low_22 (Length: 315)
Name: NF10959_low_22
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 43186025 - 43186312
Alignment:
| Q |
1 |
aagagcacaagcctggcacttgttgcnnnnnnnctctaacctctggaaaacctacatcgcagagcggaaaatggttgctaactcaacatttcttcagatg |
100 |
Q |
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| T |
43186025 |
aagagcacaagcctggcacttgttgcaaaaaacctctaacctctggaaaacctacatcgcagagtggaaaatggttgctaagtcaacatttcttcagatg |
43186124 |
T |
|
| Q |
101 |
ttatgaagctaaaacaaccactaacatcttagcaattggttttttcaattggtaaatccaacttaagccaaaatgaatggtttaaaaataaccactgttg |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43186125 |
ttatgaagctgaaacaaccactaacatcttagcaattggttttttcaattggtaaatccaacttaagccaaaatgaatggtttaaaaataaccactgttg |
43186224 |
T |
|
| Q |
201 |
tcgattgcagatcgcggagaagagtggtttgcttgaaattggctatgctacgagcta--tacagctgctatttaacaacaatgatgat |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43186225 |
tcgattgcagatcgcggagaagagtggtttgcttgaaattggctatgctacgagctatgtacagctgctatttaacaacaatgatgat |
43186312 |
T |
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