View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10959_low_24 (Length: 309)

Name: NF10959_low_24
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10959_low_24
NF10959_low_24
[»] chr3 (2 HSPs)
chr3 (1-291)||(7642932-7643222)
chr3 (17-244)||(20250718-20250945)
[»] chr8 (3 HSPs)
chr8 (23-280)||(26131123-26131379)
chr8 (17-266)||(43218652-43218901)
chr8 (157-280)||(41418390-41418513)
[»] scaffold0112 (1 HSPs)
scaffold0112 (17-280)||(33818-34081)
[»] chr7 (1 HSPs)
chr7 (17-280)||(8789717-8789979)
[»] chr5 (1 HSPs)
chr5 (32-280)||(15617477-15617725)
[»] scaffold0093 (1 HSPs)
scaffold0093 (18-268)||(16933-17183)
[»] chr4 (1 HSPs)
chr4 (104-280)||(51748421-51748596)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 7643222 - 7642932
Alignment:
Q  1 tggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7643222 tggtctgcataagaagcttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattt 7643123  T
Q  101 tttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttgga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7643122 tttgaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttgga 7643023  T
Q  201 agcatataaatttcaagttttgacaagatgtcacagaaacatgtacttatgtagtagatcgagcttgtaaccttatggagttagtcgaaac 291  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  7643022 agcatagaaatttcaagttttgacaggatgtcacagaaacatgtactcatgtagtagatcgagcttgtaaccttatggagctagtcgaaac 7642932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 20250718 - 20250945
Alignment:
Q  17 cttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcag 116  Q
    ||||| ||||||||||| ||||||| ||||||| || ||||||||| || |||||| ||||||||||||||||||||||  ||| |  |||| |||||||    
T  20250718 cttgcacatatttgttttgagtgtccttttactgtgcaggtttggcgtaagattggcctttggaatgtggttcatgaggtgtttctcaaaaagaattcag 20250817  T
Q  117 cagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaa 216  Q
    ||||||||||||||||| ||| | | |||||||| |||| |||| |||||||| |||||||||||  ||| | ||||||||| ||||||| |||| ||||    
T  20250818 cagttgatgccattttcgaattgctacatcagctttcgcaagaacttggtcaacgatttgcagctaccctttggagcctttgaaagcatagaaatctcaa 20250917  T
Q  217 gttttgacaagatgtcacagaaacatgt 244  Q
      |||| ||||| | |||| ||||||||    
T  20250918 actttggcaagagggcacaaaaacatgt 20250945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 23 - 280
Target Start/End: Original strand, 26131123 - 26131379
Alignment:
Q  23 catatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaat-aattcagcagtt 121  Q
    ||||||||||| ||||||| ||||| | || ||||||||||||||||||| |||||||||| |||||||||||  ||| || ||||  ||||||  | ||    
T  26131123 catatttgttttgagtgtccttttaatttgcaggtttggcatatgattggcctttggaatgcggttcatgaggtgtttcttaaaaaagaattca--aatt 26131220  T
Q  122 gatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaagtttt 221  Q
    |||||||||||| ||| ||| ||||||||||||| |||| |||||||| |||||||||||||||| | ||||||||||||||||| |||| ||||  |||    
T  26131221 gatgccattttcgaattgttacatcagctctcgcaagaacttggtcaacgatttgcagctgtcctttggagcctttggaagcatagaaatctcaaacttt 26131320  T
Q  222 gacaagatgtcacagaaacatgtacttatgtagtagatcgagcttgtaaccttatggag 280  Q
    | ||||| | ||||||||||||| || |||||||||||||||||||| |||||||||||    
T  26131321 ggcaagaggccacagaaacatgtgctcatgtagtagatcgagcttgtcaccttatggag 26131379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 17 - 266
Target Start/End: Complemental strand, 43218901 - 43218652
Alignment:
Q  17 cttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcag 116  Q
    ||||| ||||||||||| ||||||| ||||||| || ||||||||| || |||||| ||||||||||||||||||||||  ||| | ||||| |||||||    
T  43218901 cttgcacatatttgttttgagtgtccttttactgtgcaggtttggcgtaagattggcctttggaatgtggttcatgaggtgtttctcgaaaagaattcag 43218802  T
Q  117 cagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaa 216  Q
    ||||||||||||||||| ||| | | ||||||||||||| |||| |||||||| |||||||||||  ||| | |||||||||| |||||| |||| ||||    
T  43218801 cagttgatgccattttcgaattgctacatcagctctcgcaagaacttggtcaacgatttgcagctaccctttggagcctttgggagcatagaaatctcaa 43218702  T
Q  217 gttttgacaagatgtcacagaaacatgtacttatgtagtagatcgagctt 266  Q
      |||| |||||   |||| |||||| | ||  |||||||||||| ||||    
T  43218701 actttggcaagagaccacataaacatatgctcttgtagtagatcgggctt 43218652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 280
Target Start/End: Complemental strand, 41418513 - 41418390
Alignment:
Q  157 agaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaagttttgacaagatgtcacagaaacatgtacttatgtagta 256  Q
    ||||||| |||||| ||||||| ||||||| | ||||||||||||||||| |||| ||||| |||| ||||||||||||||||| ||| || |||||||     
T  41418513 agaatttagtcaataatttgcaactgtcctatggagcctttggaagcatagaaatctcaagctttggcaagatgtcacagaaacttgtgctcatgtagtc 41418414  T
Q  257 gatcgagcttgtaaccttatggag 280  Q
    |||||||||||| |||||||||||    
T  41418413 gatcgagcttgtcaccttatggag 41418390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 33818 - 34081
Alignment:
Q  17 cttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcag 116  Q
    ||||||||||||||||| || |||| ||||||| || ||||||||| ||  |  |||||||||||| |||||||||| |  ||| ||||||| |||| ||    
T  33818 cttgctcatatttgtttagaatgtccttttactgtgcaggtttggcgtacaaccggtctttggaatatggttcatgatgtgtttcttgaaaagaatttag 33917  T
Q  117 cagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaa 216  Q
    ||| ||||||||| ||| ||| | | ||||| || || | ||||||| ||||| ||||||||  |||||| | ||||||||||||||||| |||| ||||    
T  33918 cagctgatgccatattcgaattgctacatcaactttcacaagaatttagtcaacgatttgcaattgtcctatggagcctttggaagcatagaaatctcaa 34017  T
Q  217 gttttgacaagatgtcacagaaacatgtacttatgtagtagatcgagcttgtaaccttatggag 280  Q
      |||| |||||||||||| |||| ||| || ||||||| |||||||||||| |||||||||||    
T  34018 cctttggcaagatgtcacataaacttgtgctcatgtagtcgatcgagcttgtcaccttatggag 34081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 17 - 280
Target Start/End: Original strand, 8789717 - 8789979
Alignment:
Q  17 cttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcag 116  Q
    |||||||||||||||||| | |||| ||||||| || ||||||||| ||  |  | ||||||||||  |||||||||||  ||| ||||||| ||||||     
T  8789717 cttgctcatatttgtttcaaatgtccttttactgtgcaggtttggcgtacaaccgatctttggaatacggttcatgaggtgtttcttgaaaagaattcaa 8789816  T
Q  117 cagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaa 216  Q
    | | ||||||||| ||| ||| | | ||||| || || | | |||| | |||| |||||||| ||||||| | || |||||||||||||| |||| ||||    
T  8789817 ccgctgatgccatattcgaattgctacatcaactttcacaaaaattag-tcaacgatttgcaactgtcctatggatcctttggaagcatagaaatctcaa 8789915  T
Q  217 gttttgacaagatgtcacagaaacatgtacttatgtagtagatcgagcttgtaaccttatggag 280  Q
    | |||| |||||||||||| |||| ||| || ||||||| |||||||||||| |||||||||||    
T  8789916 gctttggcaagatgtcacataaacttgtgctcatgtagtcgatcgagcttgtcaccttatggag 8789979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 15617477 - 15617725
Alignment:
Q  32 ttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcagcagttgatgccattt 131  Q
    |||||||||| ||| |||||| ||||||||| || |  | ||||||||||||||||| | || || ||| | ||||| ||||||| |||||||||||| |    
T  15617477 ttcgagtgtcctttaactatgcaggtttggcgtagggctcgtctttggaatgtggttaacgaagcgtttctcgaaaagaattcagtagttgatgccatct 15617576  T
Q  132 tcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaagttttgacaagatgt 231  Q
    |  ||| ||  ||| ||||||||| ||||||||  ||| || |||||||| |||||| |||||||  |||||||| |||| | ||  |||| ||||||||    
T  15617577 ttgaattgtcacataagctctcgcaagaatttgaccaacgagttgcagctatcctctagagccttcagaagcatagaaatcttaaactttggcaagatgt 15617676  T
Q  232 cacagaaacatgtacttatgtagtagatcgagcttgtaaccttatggag 280  Q
    |||| |||||||| || |  ||||||| ||||||||| ||| |||||||    
T  15617677 cacataaacatgtgctcagatagtagaccgagcttgtcaccatatggag 15617725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 17183 - 16933
Alignment:
Q  18 ttgctcatatttgtttcgagtgtcattttactatgaaggtttggcatatgattggtctttggaatgtggttcatgaggcattttttgaaaataattcagc 117  Q
    |||||||||||||||| || |||| ||||||| || ||||||||  ||  |   || |||||||| ||||||||||||  ||| ||||||| || | |||    
T  17183 ttgctcatatttgtttagaatgtccttttactgtgcaggtttggtgtacaaccagtatttggaatatggttcatgaggtgtttcttgaaaagaaattagc 17084  T
Q  118 agttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagcatataaatttcaag 217  Q
    || ||||||||| ||||||| | | ||||| || || | ||||||| |||||  |||||||  |||||| |  |||||||||||||||| |||| |||||    
T  17083 agctgatgccatattcaaattgctacatcaactttcacaagaatttagtcaacaatttgcaattgtcctatttagcctttggaagcatagaaatctcaag 16984  T
Q  218 ttttgacaagatgtcacagaaacatgtacttatgtagtagatcgagcttgt 268  Q
     |||| ||| |  ||||| |||| ||| || |||| || ||||||||||||    
T  16983 ctttggcaaaacatcacataaacttgtgctcatgttgtcgatcgagcttgt 16933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 280
Target Start/End: Original strand, 51748421 - 51748596
Alignment:
Q  104 gaaaataattcagcagttgatgccattttcaaatcgttgcatcagctctcgcgagaatttggtcaatgatttgcagctgtcctctcgagcctttggaagc 203  Q
    |||||||| |||||| |||||||||||||| ||| ||| |||||  | |||  |||  ||| ||||  |||||||  |||||| | |||||||| |||||    
T  51748421 gaaaataactcagca-ttgatgccattttcgaattgttacatcaattttcgtaagatcttgatcaacaatttgcatatgtcctttggagcctttcgaagc 51748519  T
Q  204 atataaatttcaagttttgacaagatgtcacagaaacatgtacttatgtagtagatcgagcttgtaaccttatggag 280  Q
    ||| |||| ||||   | | ||||||| |||| |||||| |  | ||||||||||||||| |||| |||||||||||    
T  51748520 atagaaatctcaaacctaggcaagatgccacaaaaacatatgttcatgtagtagatcgagtttgtcaccttatggag 51748596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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