View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_low_26 (Length: 294)
Name: NF10959_low_26
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 99 - 289
Target Start/End: Original strand, 38150109 - 38150299
Alignment:
| Q |
99 |
tataaagatccaaccaaatttgtacccnnnnnnnnnnnntccaaccaaattagtcccataataacagtgacagaattaagctctgctctactatattcct |
198 |
Q |
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| T |
38150109 |
tataaagatccaaccaaatttgtacccaaaaaagaaaaatccaatcaaattagtcccataataacagtgacagaattaagctctgctctactatattcct |
38150208 |
T |
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| Q |
199 |
ctgatgaaaattgaaagggcgtctgcagttatgctataaactatgtagacctcacatcaacaatcatatcaaaaactgaatctctgcttct |
289 |
Q |
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| T |
38150209 |
ctgatgaaaattgaaagggcgtgtgcagttatgctataaactatgtagacctcacatcaacaatcatatcaaaaactgaatcactgtttct |
38150299 |
T |
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Target: chr2; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 38148405 - 38148493
Alignment:
| Q |
19 |
ctaacgtgttgagccgatccggagttcactttgaaaataggctgaaagaaaacaatctcagccgtcccttatacaagtcatataaagat |
107 |
Q |
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| T |
38148405 |
ctaacgtgttgagccgatccggagttcactttcaaaataggctgaaagaaaacaatctcagccgtcccttgtacaagtcatataaagat |
38148493 |
T |
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