View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_low_27 (Length: 280)
Name: NF10959_low_27
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 90 - 257
Target Start/End: Original strand, 9222448 - 9222615
Alignment:
| Q |
90 |
gttatcttaatctcaaattaattttctgttttatttaattaacccattcattacgttaattgcataactccttataaattataatccctatccatccaaa |
189 |
Q |
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| T |
9222448 |
gttatcttaatctcaaattaattttctgttttatttaattaacccattcattacgttaattgcataactccttataaattataatccctatccatccaaa |
9222547 |
T |
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| Q |
190 |
tccaccatcacaatcataatcatcacgattcgattcacaatcacacctttttcttctatcactacgcc |
257 |
Q |
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| T |
9222548 |
tccaccatcacaatcataatcatcacgattcgattcacaatcacacctttttcttctatcactacgcc |
9222615 |
T |
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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9222359 - 9222392
Alignment:
| Q |
1 |
aatattccctttaacctcacaaccgcaaaatcac |
34 |
Q |
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| T |
9222359 |
aatattccctttaaccgcacaaccgcaaaatcac |
9222392 |
T |
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