View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10959_low_3 (Length: 696)

Name: NF10959_low_3
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10959_low_3
NF10959_low_3
[»] chr6 (1 HSPs)
chr6 (7-680)||(33604766-33605453)
[»] chr4 (5 HSPs)
chr4 (259-406)||(6167798-6167946)
chr4 (281-404)||(41899068-41899191)
chr4 (278-360)||(3784083-3784165)
chr4 (281-340)||(5168574-5168633)
chr4 (300-372)||(37177123-37177195)
[»] chr5 (3 HSPs)
chr5 (271-403)||(15965789-15965921)
chr5 (278-344)||(1355415-1355481)
chr5 (300-344)||(1352391-1352435)
[»] chr7 (8 HSPs)
chr7 (274-401)||(7728568-7728695)
chr7 (278-404)||(38912885-38913011)
chr7 (278-388)||(38663642-38663752)
chr7 (278-347)||(16831287-16831356)
chr7 (278-329)||(34963365-34963416)
chr7 (291-404)||(21275621-21275734)
chr7 (252-344)||(46683068-46683161)
chr7 (278-330)||(18662309-18662361)
[»] scaffold0016 (1 HSPs)
scaffold0016 (254-344)||(79933-80024)
[»] chr2 (2 HSPs)
chr2 (280-402)||(32838629-32838751)
chr2 (287-404)||(19002753-19002870)
[»] chr3 (3 HSPs)
chr3 (271-344)||(4204034-4204107)
chr3 (287-393)||(31437802-31437907)
chr3 (311-406)||(1402014-1402109)
[»] chr8 (3 HSPs)
chr8 (274-401)||(44814054-44814179)
chr8 (302-412)||(41061192-41061305)
chr8 (309-406)||(42631679-42631776)
[»] chr1 (6 HSPs)
chr1 (278-406)||(1609706-1609833)
chr1 (254-405)||(25129818-25129970)
chr1 (369-410)||(15646906-15646947)
chr1 (287-388)||(2748563-2748664)
chr1 (276-317)||(3840238-3840279)
chr1 (302-410)||(44529240-44529348)
[»] scaffold0236 (1 HSPs)
scaffold0236 (288-404)||(20145-20261)


Alignment Details
Target: chr6 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 7 - 680
Target Start/End: Complemental strand, 33605453 - 33604766
Alignment:
Q  7 agagatgaaccccatagccagagacattgcaatcaaaatttaaataatggtaatatttttaagtttcacgtacgtatcaacaggtgaaacctgttcacac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33605453 agagatgaaccccatagccagagacattgcaatcaaaatttaaataatggtaatatttttaagtttcacgtacgtatcaacaggtgaaacctgttcacac 33605354  T
Q  107 atttttccaatgctacaatgtcattgccaccactttgcagctatggaatttcgagtgtttggttccaactgaaaaaataaagctctagtaattatttact 206  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33605353 atctttccaatgctacaatgtcattgccaccactttgcagctatggaatttcgattgtttggttccaactgaaaaaataaagctctagtaattatttact 33605254  T
Q  207 tgttatacttcttccactactaattgcaaaatcattnnnnnnngttcttgttaacaagtgtcctagagcatttgttaagaatacaaaaataagaataatt 306  Q
    ||||||||||||||||||||||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  33605253 tgttatacttcttccactactaattgcaaaatcattaaaaaaaattcttgttaacaagtg-cctagagcatttgttaagaatacaaaaataagaataatt 33605155  T
Q  307 gataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaaattcttctttaatcttcttaacaagtgcc 406  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  33605154 gataaatttaaagttgaaaaagttatattttaaagttttaatgatttcaatgtacaaattttaagacaaaaattcttctttagtcttcttaacaagtgcc 33605055  T
Q  407 ctaaaaaactgtttaagtataaatcaagtactagataaaatttcttaacaattcttcatt--------ttttataa-------gttagcattttccttta 491  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||        |||| |||       |||||||||||||||||    
T  33605054 ctaaaaaactgtttaaatataaatcaagtactagataaaatttcttaacaattcttctttagacaaaattttttaagacacttgttagcattttccttta 33604955  T
Q  492 taaaaaatgctagccagctcataaccaaaactcttcaaataaaccatttttagtataaatcaagtactaaaaaactgttttgtaccaaaataaactgttt 591  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33604954 taaaaaatgctagccagctcataaccaaaactcttcaaataaactatttttagtataaatcaagtactaaaaaactgttttgtaccaaaataaactgttt 33604855  T
Q  592 acataaaccatgtctggtataaatcatattgcaaatagaattttaaatatttcattttgtaaagttcaagatcataacaattgtcatat 680  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  33604854 acataaaccatgtctggtataaatcatattgcaaatagaattttaaatatttcattttgtaaagttcaagatcataagaattgtcatat 33604766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 259 - 406
Target Start/End: Complemental strand, 6167946 - 6167798
Alignment:
Q  259 aacaagtgtcct-agagcatttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaat 357  Q
    |||||||||||| |||||| |||||||||||||| |||||| |||||||||| ||||| ||||  ||||||||| |||||||||||| || |  ||||||    
T  6167946 aacaagtgtcctcagagcacttgttaagaatacacaaataaaaataattgatgaattttaagtaaaaaaagttacattttaaagtttcaatgcattgaat 6167847  T
Q  358 gtacaaattttaagacaaaaattcttctttaatcttcttaacaagtgcc 406  Q
    | |||| ||| |  |||  | ||||||||||||||||||| ||||||||    
T  6167846 gcacaattttcagtacatcatttcttctttaatcttcttatcaagtgcc 6167798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 281 - 404
Target Start/End: Complemental strand, 41899191 - 41899068
Alignment:
Q  281 ttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaaatt 380  Q
    |||||||||||  ||||  |||||||||| ||||| |||| |||||||||| |||||||||||| || |  ||||||| || | ||  ||||||| | ||    
T  41899191 ttaagaatacacgaatagaaataattgatgaattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaatattt 41899092  T
Q  381 cttctttaatcttcttaacaagtg 404  Q
    |||||||| |||||||| ||||||    
T  41899091 cttctttagtcttcttatcaagtg 41899068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 278 - 360
Target Start/End: Complemental strand, 3784165 - 3784083
Alignment:
Q  278 ttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgta 360  Q
    |||||||||||||  |||||| |||||||||| ||||| |||| |||||| ||  ||||||||||||||| |  |||||||||    
T  3784165 ttgttaagaatacgtaaataacaataattgatgaattttaagtagaaaaaatttgattttaaagttttaatgcattgaatgta 3784083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 281 - 340
Target Start/End: Complemental strand, 5168633 - 5168574
Alignment:
Q  281 ttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaa 340  Q
    ||||||||||| |||||  |||||||||| ||||| |||| |||||| ||||||||||||    
T  5168633 ttaagaatacataaatagaaataattgatgaattttaagtagaaaaaattatattttaaa 5168574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 300 - 372
Target Start/End: Original strand, 37177123 - 37177195
Alignment:
Q  300 aataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaaga 372  Q
    ||||||| || ||||||| ||| ||||||||   ||||||||||||||||  |||||| ||||||||| ||||    
T  37177123 aataatttattaatttaatgtttaaaaagttgatttttaaagttttaacgtgttgaatatacaaatttcaaga 37177195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 271 - 403
Target Start/End: Complemental strand, 15965921 - 15965789
Alignment:
Q  271 agagcatttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaa 370  Q
    ||||||||||||||||||||| |||||  |||||||||| ||||| |||| |||||||||| |||||||| ||| || |  ||||||| || | || |||    
T  15965921 agagcatttgttaagaatacacaaatagaaataattgatgaattttaagtagaaaaagttacattttaaaatttaaatgcattgaatgcaccatttctaa 15965822  T
Q  371 gacaaaaattcttctttaatcttcttaacaagt 403  Q
    ||||| | |||||||||| |||||||| |||||    
T  15965821 gacaacatttcttctttagtcttcttatcaagt 15965789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 278 - 344
Target Start/End: Complemental strand, 1355481 - 1355415
Alignment:
Q  278 ttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttt 344  Q
    |||||||| |||||||||||| |||||||||||||||| || | ||| || ||| |||| |||||||    
T  1355481 ttgttaaggatacaaaaataaaaataattgataaattttaaatagaagaaattacatttaaaagttt 1355415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 300 - 344
Target Start/End: Complemental strand, 1352435 - 1352391
Alignment:
Q  300 aataattgataaatttaaagttgaaaaagttatattttaaagttt 344  Q
    |||||||||||||||| ||||  ||||||||| ||||||||||||    
T  1352435 aataattgataaattttaagtaaaaaaagttacattttaaagttt 1352391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 274 - 401
Target Start/End: Original strand, 7728568 - 7728695
Alignment:
Q  274 gcatttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagac 373  Q
    ||||||| |||| |||||||||||| |||||||||||||||| || |  ||||||||| |||||||| ||| || || || |||| || | ||  |||||    
T  7728568 gcatttgataaggatacaaaaataaaaataattgataaattttaattataaaaagttacattttaaaatttcaatgaattaaatgcaccatttccaagac 7728667  T
Q  374 aaaaattcttctttaatcttcttaacaa 401  Q
    ||||||| || |||||||||||||||||    
T  7728668 aaaaattattttttaatcttcttaacaa 7728695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 278 - 404
Target Start/End: Original strand, 38912885 - 38913011
Alignment:
Q  278 ttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaa 377  Q
    ||||||| |||||| |||||  |||||||||||||||| || | ||||||||| ||||||||||||| || |  ||||||| || | ||  ||||||| |    
T  38912885 ttgttaaaaatacacaaatagaaataattgataaattttaaatagaaaaagttgtattttaaagtttcaatgcattgaatgcaccatttccaagacaaca 38912984  T
Q  378 attcttctttaatcttcttaacaagtg 404  Q
     || |||||||||||||||| ||||||    
T  38912985 tttattctttaatcttcttatcaagtg 38913011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 278 - 388
Target Start/End: Complemental strand, 38663752 - 38663642
Alignment:
Q  278 ttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaa 377  Q
    |||||||| |||||||||||  |||||||||||||||| || |  |||||||||  ||||||||||| || |  || |||  |||| |||||| ||||||    
T  38663752 ttgttaaggatacaaaaatagaaataattgataaattttaaatataaaaagttactttttaaagtttcaatgcattaaatacacaatttttaaaacaaaa 38663653  T
Q  378 attcttcttta 388  Q
     ||||||||||    
T  38663652 tttcttcttta 38663642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 278 - 347
Target Start/End: Complemental strand, 16831356 - 16831287
Alignment:
Q  278 ttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaa 347  Q
    |||||||| |||||||||| | |||||||||||||||| || |  |||||||||  ||||||||||||||    
T  16831356 ttgttaaggatacaaaaatgaaaataattgataaatttcaaataaaaaaagttactttttaaagttttaa 16831287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 34963365 - 34963416
Alignment:
Q  278 ttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagt 329  Q
    |||||||| |||||||||| | |||||||||||||||| |||| ||||||||    
T  34963365 ttgttaaggatacaaaaatgaaaataattgataaattttaagtagaaaaagt 34963416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 404
Target Start/End: Original strand, 21275621 - 21275734
Alignment:
Q  291 aaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaaattcttctttaat 390  Q
    |||||| | ||||||||||| |||| |||| |||||||||   ||||||| |||||| |  ||||||| ||   || |||||||||  |||||||||||     
T  21275621 aaaaatgaaaataattgatatattttaagtagaaaaagttgctttttaaaattttaatgcattgaatgcaccttttctaagacaaactttcttctttaag 21275720  T
Q  391 cttcttaacaagtg 404  Q
    |||||||| |||||    
T  21275721 cttcttaagaagtg 21275734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 344
Target Start/End: Complemental strand, 46683161 - 46683068
Alignment:
Q  252 tcttgttaacaagtgtcct-agagcatttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttt 344  Q
    ||||||||| |||||| || || |||||||||||  || |||||||   |||||||| ||||||| ||||  ||||||||| ||||||||||||    
T  46683161 tcttgttaataagtgttcttagggcatttgttaaagatgcaaaaatggaaataattggtaaattttaagtataaaaagttacattttaaagttt 46683068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 18662309 - 18662361
Alignment:
Q  278 ttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagtt 330  Q
    |||||||| |||||||||| | ||| |||||||||||| |||| |||||||||    
T  18662309 ttgttaaggatacaaaaatgaaaatcattgataaattttaagtagaaaaagtt 18662361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 254 - 344
Target Start/End: Original strand, 79933 - 80024
Alignment:
Q  254 ttgttaacaagtgtcct-agagcatttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttt 344  Q
    ||||||||||||||| | || ||| |||||||||||||| |||||| ||| |||||| ||||| | || |||||||||||||||||||||||    
T  79933 ttgttaacaagtgtctttagggcaattgttaagaatacataaataaaaattattgatgaattttatgtagaaaaagttatattttaaagttt 80024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 402
Target Start/End: Original strand, 32838629 - 32838751
Alignment:
Q  280 gttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaaat 379  Q
    |||||| |||||||||| | |||||||||||||||| || | ||||| |||| |||||||||||| || |  ||||||| |  | ||  ||||||||| |    
T  32838629 gttaaggatacaaaaatgaaaataattgataaattttaaatagaaaatgttacattttaaagtttcaatgcattgaatgcatcatttccaagacaaaatt 32838728  T
Q  380 tcttctttaatcttcttaacaag 402  Q
    ||||||||||| |||||||||||    
T  32838729 tcttctttaattttcttaacaag 32838751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 404
Target Start/End: Original strand, 19002753 - 19002870
Alignment:
Q  287 atacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaaattcttctt 386  Q
    |||| ||||| | |||||||||||||||| |||| |||||| |||  ||||||| ||| || |  ||||||| || | ||  ||||||||  ||||||||    
T  19002753 atactaaaatgaaaataattgataaattttaagtagaaaaatttactttttaaaatttcaatgcattgaatgcaccatttccaagacaaagtttcttctt 19002852  T
Q  387 taatcttcttaacaagtg 404  Q
    || |||| ||||||||||    
T  19002853 tagtctttttaacaagtg 19002870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 271 - 344
Target Start/End: Original strand, 4204034 - 4204107
Alignment:
Q  271 agagcatttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttt 344  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| || |  |||||||||  |||||||||||    
T  4204034 agagcatttgttaagtatacaaaaataaaaataattgataaattttaaataaaaaaagttactttttaaagttt 4204107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 287 - 393
Target Start/End: Complemental strand, 31437907 - 31437802
Alignment:
Q  287 atacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaaattcttctt 386  Q
    |||||||||| | |||||||||||| |||||| | ||||||||||| ||||||||||| || |  |||||||  | | ||||||||||||| ||||| ||    
T  31437907 atacaaaaatgaaaataattgataattttaaa-tagaaaaagttattttttaaagtttgaatgtattgaatgcgctatttttaagacaaaatttcttttt 31437809  T
Q  387 taatctt 393  Q
    || ||||    
T  31437808 tagtctt 31437802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 406
Target Start/End: Original strand, 1402014 - 1402109
Alignment:
Q  311 aatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaaattcttctttaatcttcttaacaagtgcc 406  Q
    ||||| |||| |||||||||| |||||||||||| || |  ||||||| || | ||  ||||||| | |||||||||| |||||||| ||||||||    
T  1402014 aattttaagtagaaaaagttacattttaaagtttcaatgcattgaatgcaccatttccaagacaacatttcttctttagtcttcttatcaagtgcc 1402109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 274 - 401
Target Start/End: Complemental strand, 44814179 - 44814054
Alignment:
Q  274 gcatttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagac 373  Q
    ||||||||||   |||||||||||  |||||||||||||||| |||| ||||  |||  |||||||||||| || |  ||||||| || | ||| |||||    
T  44814179 gcatttgttagcgatacaaaaatagaaataattgataaattttaagtagaaagggttgcattttaaagtttcaatg--ttgaatgcaccattttcaagac 44814082  T
Q  374 aaaaattcttctttaatcttcttaacaa 401  Q
    |||| |||||||||| ||||||||||||    
T  44814081 aaaatttcttctttagtcttcttaacaa 44814054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 302 - 412
Target Start/End: Complemental strand, 41061305 - 41061192
Alignment:
Q  302 taattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaa---attcttctttaatcttcttaa 398  Q
    |||||| |||| || |||| ||||| ||||| ||||||||||||||    || ||||||||| |||||||||||||   ||| |||||||   |||||||    
T  41061305 taattggtaaaatttaagtagaaaaggttattttttaaagttttaatatgttaaatgtacaatttttaagacaaaatttatttttctttagatttcttaa 41061206  T
Q  399 caagtgccctaaaa 412  Q
    ||||||||| ||||    
T  41061205 caagtgccccaaaa 41061192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 406
Target Start/End: Complemental strand, 42631776 - 42631679
Alignment:
Q  309 taaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaaattcttctttaatcttcttaacaagtgcc 406  Q
    ||||||| |||| |||||| |||  |||||||||||||| |  ||||||| || | ||| ||||||||| || |||||||  ||||||||| ||||||    
T  42631776 taaattttaagtagaaaaaattaccttttaaagttttaatgcattgaatgcaccattttcaagacaaaatttattctttagacttcttaactagtgcc 42631679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 278 - 406
Target Start/End: Complemental strand, 1609833 - 1609706
Alignment:
Q  278 ttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaa 377  Q
    |||||||  ||||||| |||| |||||||||||||||| |||| |||||| ||| ||||||| |||| ||    ||||||| |  | ||| |||||||||    
T  1609833 ttgttaaagatacaaagataaaaataattgataaattttaagtagaaaaaattacattttaa-gtttcaatacattgaatgcatcattttcaagacaaaa 1609735  T
Q  378 attcttctttaatcttcttaacaagtgcc 406  Q
     || |||||||||||||||||||||||||    
T  1609734 gttgttctttaatcttcttaacaagtgcc 1609706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 254 - 405
Target Start/End: Original strand, 25129818 - 25129970
Alignment:
Q  254 ttgttaacaagtgtcct-agagcatttgttaagaatacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatt 352  Q
    ||||||||||||| | | || ||| ||||||| |||| | |||||  |||||||||| ||||| |||| |||||||||| |||||||||||| || |  |    
T  25129818 ttgttaacaagtgccttcagggcacttgttaaaaatatataaatagaaataattgatgaattttaagtagaaaaagttacattttaaagtttcaatgcat 25129917  T
Q  353 tgaatgtacaaattttaagacaaaaattcttctttaatcttcttaacaagtgc 405  Q
    |||||| || | ||  |||| || | |||||||||| |||||||| |||||||    
T  25129918 tgaatgcaccatttccaagataacatttcttctttagtcttcttatcaagtgc 25129970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 369 - 410
Target Start/End: Complemental strand, 15646947 - 15646906
Alignment:
Q  369 aagacaaaaattcttctttaatcttcttaacaagtgccctaa 410  Q
    ||||||||| ||||||||||||||| ||||||||||||||||    
T  15646947 aagacaaaatttcttctttaatctttttaacaagtgccctaa 15646906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 388
Target Start/End: Complemental strand, 2748664 - 2748563
Alignment:
Q  287 atacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaaattcttctt 386  Q
    |||||||||||  |||||||||||||||| ||||  ||||| |||  ||| ||||||| || |  ||||||  || | ||||||||||||| ||||||||    
T  2748664 atacaaaaatagaaataattgataaattttaagtaaaaaaaattacttttcaaagtttcaatgcattgaattcaccatttttaagacaaaatttcttctt 2748565  T
Q  387 ta 388  Q
    ||    
T  2748564 ta 2748563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 3840238 - 3840279
Alignment:
Q  276 atttgttaagaatacaaaaataagaataattgataaatttaa 317  Q
    |||||||||||| |||||||||| |||||||||||| |||||    
T  3840238 atttgttaagaagacaaaaataaaaataattgataagtttaa 3840279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 302 - 410
Target Start/End: Complemental strand, 44529348 - 44529240
Alignment:
Q  302 taattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaaattcttctttaatcttcttaacaa 401  Q
    |||||||||||||| | |||||||||||||  |||||| |||||||    ||||||  |||| |||||||| |||| |||  |||||| ||||||| |||    
T  44529348 taattgataaattttatgttgaaaaagttactttttaatgttttaatatgttgaatacacaacttttaagataaaacttccactttaaacttcttatcaa 44529249  T
Q  402 gtgccctaa 410  Q
     || |||||    
T  44529248 atgtcctaa 44529240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 288 - 404
Target Start/End: Complemental strand, 20261 - 20145
Alignment:
Q  288 tacaaaaataagaataattgataaatttaaagttgaaaaagttatattttaaagttttaacgatttgaatgtacaaattttaagacaaaaattcttcttt 387  Q
    ||||||||| | |||| ||||||||||| |||| ||||||||||| ||||||||||| ||    |||||||||  | ||  ||||||||| ||||||| |    
T  20261 tacaaaaatgaaaatagttgataaattttaagtagaaaaagttattttttaaagtttcaatatattgaatgtatcatttccaagacaaaatttcttctct 20162  T
Q  388 aatcttcttaacaagtg 404  Q
    | ||||||||| |||||    
T  20161 agtcttcttaataagtg 20145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University