View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10959_low_30 (Length: 253)
Name: NF10959_low_30
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_low_30 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 33 - 253
Target Start/End: Original strand, 7919773 - 7919990
Alignment:
| Q |
33 |
tatgtctgaattaacaatcagcgaggcataaatgtaatgaccaaatcagacaacagggttgaagaatgaagatagataatcgacagctaaaagttgatgt |
132 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7919773 |
tatgtctgaattaacaatcagcaaggcataaatgtaatgaccaaatcagacaacagggttgaagaatgaagatagataatcgacagctaaaagttgatgt |
7919872 |
T |
|
| Q |
133 |
tcacaataaaactaagcaagctgtgcatgtaaactagtagtactctatcgataatgaaatatgagcaaaatgaatttaaaaagtcaaatgtatttgatct |
232 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7919873 |
tcacaataaaactaagcaagttgtgcatgtaaac---tagtactctatcgataatgaaatatgagcaaaatgaatttaaaaagtcaaatgtatttgatct |
7919969 |
T |
|
| Q |
233 |
aaattttggaccaaatacatt |
253 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
7919970 |
aaattttggaccaaatacatt |
7919990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 253
Target Start/End: Complemental strand, 33653263 - 33653224
Alignment:
| Q |
214 |
agtcaaatgtatttgatctaaattttggaccaaatacatt |
253 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
33653263 |
agtcaaatgtgtttggtctaaattttggaccaaatacatt |
33653224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 185 - 253
Target Start/End: Complemental strand, 31236964 - 31236896
Alignment:
| Q |
185 |
aatgaaatatgagcaaaatgaatttaaaaagtcaaatgtatttgatctaaattttggaccaaatacatt |
253 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
31236964 |
aatgaaatatgagcaaaatgaattcaaaaagtcaaatgtatttggtgtaaattttggaccaaatacatt |
31236896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 210 - 253
Target Start/End: Original strand, 15082650 - 15082693
Alignment:
| Q |
210 |
aaaaagtcaaatgtatttgatctaaattttggaccaaatacatt |
253 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15082650 |
aaaaaatcaaatgtatttgatctaaattttggactaaatacatt |
15082693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 253
Target Start/End: Original strand, 46170408 - 46170451
Alignment:
| Q |
209 |
taaaaagtcaaatgtatttgatctaaattttggaccaaatacatt |
253 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
46170408 |
taaaaagtcaaatgtatttaatctaaa-tttggaccaaatacatt |
46170451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 32052440 - 32052399
Alignment:
| Q |
211 |
aaaagtcaaatgtatttgatctaaattttggaccaaatacatt |
253 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
32052440 |
aaaagtcaaatgtatttgatctaaa-tttagaccaaatacatt |
32052399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 2511473 - 2511445
Alignment:
| Q |
210 |
aaaaagtcaaatgtatttgatctaaattt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2511473 |
aaaaagtcaaatgtatttgatctaaattt |
2511445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University