View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_low_33 (Length: 239)
Name: NF10959_low_33
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 7920022 - 7920242
Alignment:
| Q |
1 |
aatacatttaacttttttggatatttttggttatatttcattccaaaggaaatactagttttcctcgccgagaaagggaagggggagtttcaaaagtgta |
100 |
Q |
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| T |
7920022 |
aatacatttaacttttttggatatttttggttatatttcattccaaaggaaatactagttttcctcgccgagaaagggaagggggagtttcaaaagtgta |
7920121 |
T |
|
| Q |
101 |
agtgttcctatcaaaacaatcaattctatatttggttgaaccaattaactgtgaagtttaggctaactagttgaaaccacaaaattatggatacacaaaa |
200 |
Q |
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| T |
7920122 |
agtgttcctatcaaaacaatcaattctatatttggttgaaccaattaactgtgaagtttaggctaactagttgaaaccacaaaattatggat--acaaaa |
7920219 |
T |
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| Q |
201 |
attcaattttgaagcaacaaagc |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
7920220 |
attcaattttgaagcaacaaagc |
7920242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 31236903 - 31236838
Alignment:
| Q |
1 |
aatacatttaacttttttggatatttttggttatatttcattccaaaggaaatactagttttcctc |
66 |
Q |
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| T |
31236903 |
aatacattaaacttttttagatatttttgcttatatttcattccaaaggaagtactagttttcctc |
31236838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 31236758 - 31236697
Alignment:
| Q |
140 |
accaattaactgtgaagtttaggctaactagttgaaaccacaaaattatggatacacaaaaa |
201 |
Q |
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| T |
31236758 |
accaattaattgtgaagcttatgctaactggttaaaaccataaaattatggatacacaaaaa |
31236697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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