View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_low_36 (Length: 227)
Name: NF10959_low_36
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_low_36 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 7643449 - 7643223
Alignment:
| Q |
1 |
gaggatatgaccaacttttatactttatttcctgttttaattgtgggatttgttatgctagttaacgataattaataggtattcatttttatctttcttt |
100 |
Q |
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| T |
7643449 |
gaggatatgaccaacttttatactttattttctgttttaattgtgggatttgttatactagttaacgataactaataggtatccatttttatctttcttt |
7643350 |
T |
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| Q |
101 |
aatgaaggtccttaataggttgatgatcttgttaagtaaaggacttccccattggaattgctcttagcctcttatatattattcaagataaggaagtgca |
200 |
Q |
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| T |
7643349 |
aatgaaggtccttaataggttgatgatcttgttaagtaaaggacttccccattggaattgctcttagcctcttatatattattcaagataaggaagtgca |
7643250 |
T |
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| Q |
201 |
atgtcccataaattgtgtgagttgtgg |
227 |
Q |
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| T |
7643249 |
atgtcccataaattgtgtgagttgtgg |
7643223 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 26131055 - 26131100
Alignment:
| Q |
182 |
ttcaagataaggaagtgcaatgtcccataaattgtgtgagttgtgg |
227 |
Q |
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| T |
26131055 |
ttcaagataaaggagtgcaatgtcccacaagttgtgtgagttgtgg |
26131100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 8789655 - 8789699
Alignment:
| Q |
182 |
ttcaagataaggaagtgcaatgtcccataaattgtgtgagttgtg |
226 |
Q |
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| T |
8789655 |
ttcaagataaaggagtgcaatgtcccataagttgtgtgagctgtg |
8789699 |
T |
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