View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10959_low_39 (Length: 211)
Name: NF10959_low_39
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10959_low_39 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 3e-56; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 55 - 211
Target Start/End: Original strand, 44728338 - 44728498
Alignment:
| Q |
55 |
ggtggtggagagtggtagtaaagtttagggctgtaatgatgcactggtggaggaggagaggaatatttgtatggcttctt---tggtggtggggaatggt |
151 |
Q |
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| T |
44728338 |
ggtggtggagagtggtagtagggcttagggctgacgtgatgcactggtggaggaggagaggaatatttgtatggcttctttggtggtggtggggaatggt |
44728437 |
T |
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| Q |
152 |
agtaaggtttagggctt-acatgcactggtggtggaggagaagaatatttatatggtttct |
211 |
Q |
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| T |
44728438 |
agtaaggtttagggcttaacatgcactggtggtggaggagaagaatatttgtatggtttct |
44728498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 55 - 165
Target Start/End: Original strand, 44728422 - 44728533
Alignment:
| Q |
55 |
ggtggtggagagtggtagtaaagtttagggctgtaatgatgcactggtggaggaggagaggaatatttgtatggcttcttt---ggtggtggggaatggt |
151 |
Q |
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| T |
44728422 |
ggtggtggggaatggtagtaaggtttagggct-taac-atgcactggtggtggaggagaagaatatttgtatggtttctttgggggtggtggagaatggt |
44728519 |
T |
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| Q |
152 |
agtaaggtttaggg |
165 |
Q |
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| T |
44728520 |
agtaaggtttaggg |
44728533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 44728296 - 44728416
Alignment:
| Q |
97 |
actggtggaggaggagaggaatatttgtatggcttctt---tggtggtggggaatggtagtaaggtttagggcttac---atgcactggtggtggaggag |
190 |
Q |
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| T |
44728296 |
actggtggtggaggggatgagtatttgtatggcttctttggtggtggtggagagtggtagtagggcttagggctgacgtgatgcactggtggaggaggag |
44728395 |
T |
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| Q |
191 |
aagaatatttatatggtttct |
211 |
Q |
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| T |
44728396 |
aggaatatttgtatggcttct |
44728416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 44728542 - 44728586
Alignment:
| Q |
99 |
tggtggaggaggagaggaatatttgtatggcttctttggtggtgg |
143 |
Q |
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| T |
44728542 |
tggtggaggaggagaagaatacttgtaaggtttctttggtggtgg |
44728586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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