View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10959_low_7 (Length: 421)

Name: NF10959_low_7
Description: NF10959
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10959_low_7
NF10959_low_7
[»] chr8 (21 HSPs)
chr8 (19-244)||(3749519-3749744)
chr8 (92-200)||(11139939-11140047)
chr8 (323-387)||(41972979-41973043)
chr8 (323-387)||(7389221-7389285)
chr8 (323-387)||(36776427-36776491)
chr8 (321-387)||(40616094-40616160)
chr8 (323-384)||(40587695-40587756)
chr8 (323-387)||(4466420-4466484)
chr8 (323-387)||(24053937-24054001)
chr8 (323-387)||(25346057-25346121)
chr8 (335-384)||(8760736-8760785)
chr8 (322-387)||(25620714-25620779)
chr8 (335-384)||(25836268-25836317)
chr8 (323-370)||(25616515-25616562)
chr8 (321-387)||(44389005-44389071)
chr8 (330-380)||(45298259-45298309)
chr8 (321-387)||(45435011-45435077)
chr8 (335-384)||(1942824-1942873)
chr8 (323-380)||(19243258-19243315)
chr8 (323-380)||(19316442-19316499)
chr8 (335-384)||(32844184-32844233)
[»] chr7 (17 HSPs)
chr7 (26-128)||(2947673-2947775)
chr7 (323-387)||(49146122-49146186)
chr7 (323-384)||(29467774-29467835)
chr7 (330-387)||(29684113-29684170)
chr7 (323-387)||(39651148-39651212)
chr7 (150-204)||(2946407-2946461)
chr7 (335-384)||(3791514-3791563)
chr7 (330-387)||(35156995-35157052)
chr7 (323-380)||(46197440-46197497)
chr7 (323-387)||(11840447-11840511)
chr7 (323-387)||(21600970-21601034)
chr7 (323-387)||(34872192-34872256)
chr7 (323-370)||(4848371-4848418)
chr7 (331-361)||(47168681-47168711)
chr7 (330-387)||(9143506-9143563)
chr7 (335-384)||(24684636-24684685)
chr7 (323-384)||(44804543-44804604)
[»] chr5 (10 HSPs)
chr5 (322-386)||(12422345-12422409)
chr5 (323-387)||(30754432-30754496)
chr5 (323-387)||(36886968-36887032)
chr5 (336-386)||(42977833-42977883)
chr5 (335-384)||(6305452-6305501)
chr5 (335-384)||(43138549-43138598)
chr5 (323-387)||(3088031-3088095)
chr5 (332-361)||(34377078-34377107)
chr5 (323-387)||(25698717-25698781)
chr5 (323-387)||(30140525-30140589)
[»] chr3 (14 HSPs)
chr3 (321-387)||(11602164-11602230)
chr3 (323-387)||(19368941-19369005)
chr3 (321-387)||(28981817-28981883)
chr3 (323-387)||(53800522-53800586)
chr3 (325-387)||(26777850-26777912)
chr3 (321-387)||(40831926-40831992)
chr3 (323-387)||(29530561-29530625)
chr3 (335-384)||(11955528-11955577)
chr3 (339-380)||(2847341-2847382)
chr3 (323-384)||(4139350-4139411)
chr3 (335-376)||(22473679-22473720)
chr3 (335-384)||(35855239-35855288)
chr3 (323-387)||(22519212-22519276)
chr3 (323-387)||(26102150-26102214)
[»] chr6 (10 HSPs)
chr6 (321-387)||(25529262-25529328)
chr6 (330-387)||(28573828-28573885)
chr6 (323-380)||(34316974-34317031)
chr6 (323-387)||(4107977-4108041)
chr6 (144-204)||(31238497-31238557)
chr6 (26-198)||(7556837-7557005)
chr6 (321-387)||(33328277-33328343)
chr6 (323-384)||(4897497-4897558)
chr6 (159-204)||(31247882-31247927)
chr6 (323-387)||(9737752-9737816)
[»] scaffold0051 (1 HSPs)
scaffold0051 (323-387)||(62085-62149)
[»] chr4 (26 HSPs)
chr4 (323-387)||(13171648-13171712)
chr4 (323-387)||(50119957-50120021)
chr4 (330-387)||(3757756-3757813)
chr4 (330-387)||(17730463-17730520)
chr4 (330-387)||(30529278-30529335)
chr4 (323-380)||(35833420-35833477)
chr4 (323-387)||(3821198-3821262)
chr4 (323-387)||(12682755-12682819)
chr4 (323-387)||(46104202-46104266)
chr4 (136-187)||(46843078-46843129)
chr4 (323-386)||(51347511-51347574)
chr4 (335-384)||(8956951-8957000)
chr4 (335-384)||(8986923-8986972)
chr4 (335-384)||(37349821-37349870)
chr4 (335-384)||(53991554-53991603)
chr4 (323-387)||(2116112-2116176)
chr4 (323-387)||(24547354-24547418)
chr4 (321-387)||(16896006-16896072)
chr4 (335-384)||(578607-578656)
chr4 (323-384)||(24948289-24948350)
chr4 (335-384)||(29712405-29712454)
chr4 (335-376)||(35716309-35716350)
chr4 (335-387)||(15704146-15704198)
chr4 (323-387)||(20588585-20588649)
chr4 (335-387)||(36743201-36743253)
chr4 (323-387)||(39716717-39716781)
[»] chr2 (8 HSPs)
chr2 (323-387)||(19486212-19486276)
chr2 (323-387)||(10876571-10876633)
chr2 (323-384)||(17836990-17837051)
chr2 (323-384)||(32677186-32677247)
chr2 (335-384)||(9920912-9920961)
chr2 (330-387)||(19486111-19486168)
chr2 (323-387)||(10050189-10050253)
chr2 (323-387)||(28607244-28607308)
[»] chr1 (14 HSPs)
chr1 (323-387)||(46626324-46626388)
chr1 (323-384)||(33075659-33075720)
chr1 (323-384)||(38894778-38894839)
chr1 (323-387)||(5426239-5426303)
chr1 (323-387)||(19322344-19322408)
chr1 (323-387)||(47134727-47134791)
chr1 (321-387)||(19400752-19400818)
chr1 (323-384)||(22198910-22198971)
chr1 (335-384)||(29844884-29844933)
chr1 (323-387)||(16300412-16300476)
chr1 (321-387)||(50557848-50557913)
chr1 (335-384)||(10766221-10766270)
chr1 (322-371)||(43116070-43116119)
chr1 (335-387)||(52306104-52306156)
[»] scaffold0385 (1 HSPs)
scaffold0385 (335-384)||(8303-8352)
[»] scaffold0009 (1 HSPs)
scaffold0009 (323-384)||(225458-225519)
[»] scaffold0429 (1 HSPs)
scaffold0429 (330-380)||(12991-13040)
[»] scaffold0121 (1 HSPs)
scaffold0121 (332-361)||(23500-23529)
[»] scaffold0045 (1 HSPs)
scaffold0045 (322-359)||(18896-18933)
[»] scaffold0004 (1 HSPs)
scaffold0004 (332-361)||(353549-353578)


Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 3749519 - 3749744
Alignment:
Q  19 gttttaacacataaaatgatcaaaaagaaaattaacattttcaactttcagccaccaatagatggaaaattttactttatccatgagcttcggaataaat 118  Q
    |||| |||| ||||||||| |||||  |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||    
T  3749519 gtttcaacatataaaatgaccaaaagaaaaattaacattttgaactttcagccaccaatagatagaaaattttactttatccatgagcttccgaatagat 3749618  T
Q  119 ttagctttattgttatcgaacatattattcctttctgtccacaacactcaaacacaacaaagccaaatttgctgcaaaaatgatcgctctcgttatgaga 218  Q
    |||||||||||||||  |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  3749619 ttagctttattgttaaagaacatcttattcctttctgtccacaacacttaaacacaacaaagccaaatttgctgcaaaaatgatcgccgtcgttttgaga 3749718  T
Q  219 aaacaaatttgattattatttcattc 244  Q
    ||||||||||||||||||||||||||    
T  3749719 aaacaaatttgattattatttcattc 3749744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 11140047 - 11139939
Alignment:
Q  92 actttatccatgagcttcggaataaatttagctttattgttatcgaacatattattcctttctgtccacaacactcaaacacaacaaagccaaatttgct 191  Q
    ||||||||||| |||||||||||| |||||| ||||||||||   | ||| |||||||| ||||||||||||||| |||||||||||||||| ||| |||    
T  11140047 actttatccatcagcttcggaatagatttagttttattgttaaaaagcatgttattcctctctgtccacaacactaaaacacaacaaagccatattagct 11139948  T
Q  192 gcaaaaatg 200  Q
    |||||||||    
T  11139947 gcaaaaatg 11139939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 41972979 - 41973043
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||||||||||||||    
T  41972979 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctactaattggttgag 41973043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 7389221 - 7389285
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| ||||||||||||||||||||| ||||||||||||| |||||  ||| |||||||||||    
T  7389221 atgtccattgattttaccattttgccccaaggaggggcaatttggtaaattacaaattggttgag 7389285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 36776427 - 36776491
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  36776427 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 36776491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 40616160 - 40616094
Alignment:
Q  321 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||||| |||| ||||||||||||| ||||  || ||||||| ||||||||||||||||||||||    
T  40616160 ccatgtcccttgaatttaccattttgctcctataagaggcaatttggtaatctactaattggttgag 40616094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 40587756 - 40587695
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  40587756 atgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 40587695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 4466484 - 4466420
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||||||||||||||| ||| |||||||||||||| |||||  ||| |||||||||||    
T  4466484 atgtccattgattttaccattttacccttaggaggggcaatttggtaaattacaaattggttgag 4466420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 24053937 - 24054001
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||| ||||  |||||||||| ||||||||||| ||||||||||    
T  24053937 atgtcccttgaatttaccattttgctcctataaggggcaatttggtaatctacttattggttgag 24054001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 25346057 - 25346121
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| |||||||||||||| |||  |||||||||| ||||||||||| ||||||||||    
T  25346057 atgtccattgaatttaccattttgcctctataaggggcaatttggtaatctacttattggttgag 25346121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 8760736 - 8760785
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  8760736 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8760785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 25620779 - 25620714
Alignment:
Q  322 catgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    ||||||| |||||||||| |||||||||||| ||||||||||| |||||  ||| |||| ||||||    
T  25620779 catgtccattgattttactattttgcccctatgaggggcaatttggtaaattacaaattagttgag 25620714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 25836317 - 25836268
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  25836317 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 25836268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 370
Target Start/End: Complemental strand, 25616562 - 25616515
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaa 370  Q
    |||||| |||||||||||||||||||| || ||||||||||| |||||    
T  25616562 atgtccattgattttaccattttgcccttaagaggggcaatttggtaa 25616515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 44389071 - 44389005
Alignment:
Q  321 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||||| |||| ||||||||||| ||| ||  ||||| |||| ||||||||| ||||||||||||    
T  44389071 ccatgtcccttgaatttaccatttttcccttataaggggtaatttggtaatctattaattggttgag 44389005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 380
Target Start/End: Complemental strand, 45298309 - 45298259
Alignment:
Q  330 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaatt 380  Q
    ||||||||||| |||| |||||| ||||||||||| |||||| ||||||||    
T  45298309 ttgattttacctttttacccctaagaggggcaatttggtaatttactaatt 45298259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 45435011 - 45435077
Alignment:
Q  321 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||||  |||| ||||||||||||||| ||  |||||||||| ||||||||||||| || |||||    
T  45435011 ccatgtcacttgaatttaccattttgcccttataaggggcaatttggtaatctactaaatgattgag 45435077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 1942824 - 1942873
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||||||||||| |||  |||||||||| ||||||||||| |||||||    
T  1942824 tttaccattttgcctctataaggggcaatttggtaatctacttattggtt 1942873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 19243258 - 19243315
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaatt 380  Q
    ||||| |||||||||||| ||||||||||   |||||||||| |||||| ||||||||    
T  19243258 atgtctgttgattttacctttttgcccctcttaggggcaatttggtaatttactaatt 19243315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 19316442 - 19316499
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaatt 380  Q
    ||||| |||||||||||| ||||||||||   |||||||||| |||||| ||||||||    
T  19316442 atgtctgttgattttacctttttgcccctcttaggggcaatttggtaatttactaatt 19316499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 32844184 - 32844233
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||||||||||||| |  |||||||||| ||||||||||| |||||||    
T  32844184 tttaccattttgccccgataaggggcaatttggtaatctacttattggtt 32844233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 26 - 128
Target Start/End: Complemental strand, 2947775 - 2947673
Alignment:
Q  26 cacataaaatgatcaaaaagaaaattaacattttcaactttcagccaccaatagatggaaaattttactttatccatgagcttcggaataaatttagctt 125  Q
    ||||| |||||| ||||| ||||||||||||||| | ||||||||||||||||| | |||| ||| ||||||||||| |||||| ||||| |||||||||    
T  2947775 cacatcaaatgaccaaaaggaaaattaacattttgagctttcagccaccaataggtagaaactttcactttatccatcagcttcagaatagatttagctt 2947676  T
Q  126 tat 128  Q
    |||    
T  2947675 tat 2947673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 49146186 - 49146122
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||  ||| |||||||||||    
T  49146186 atgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 49146122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 29467774 - 29467835
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  29467774 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 29684170 - 29684113
Alignment:
Q  330 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||| ||||||||||| ||||||  |||||||||| ||||||||||||||||||||||    
T  29684170 ttgaatttaccattttacccctataaggggcaatttggtaatctactaattggttgag 29684113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 39651212 - 39651148
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  |||||||||||||||    
T  39651212 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattactaattggttgag 39651148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Complemental strand, 2946461 - 2946407
Alignment:
Q  150 tttctgtccacaacactcaaacacaacaaagccaaatttgctgcaaaaatgatcg 204  Q
    ||||||||||||||| | ||| |||||||||||| ||| ||||||||||||||||    
T  2946461 tttctgtccacaacattgaaaaacaacaaagccatattagctgcaaaaatgatcg 2946407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 3791514 - 3791563
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  3791514 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 3791563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 35157052 - 35156995
Alignment:
Q  330 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||| ||||||||||||||||||  |||||||||| ||||||||||| || |||||||    
T  35157052 ttgaatttaccattttgcccctataaggggcaatttggtaatctacttatcggttgag 35156995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 46197440 - 46197497
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaatt 380  Q
    |||||| |||||||||||||||||||| |||||| ||||||| ||||||  |||||||    
T  46197440 atgtccattgattttaccattttgcccttaggagaggcaatttggtaattcactaatt 46197497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 11840511 - 11840447
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  || ||||||||||||    
T  11840511 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 11840447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 21601034 - 21600970
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  || ||||||||||||    
T  21601034 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 21600970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 34872192 - 34872256
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| ||||  ||||||||||| |||||  |||||||||| ||||||||||| ||||||||||    
T  34872192 atgtcctttgaacttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 34872256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 323 - 370
Target Start/End: Original strand, 4848371 - 4848418
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaa 370  Q
    |||||| ||||||||||||||||||||||| |||||| |||| |||||    
T  4848371 atgtccattgattttaccattttgcccctatgaggggtaatttggtaa 4848418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 331 - 361
Target Start/End: Original strand, 47168681 - 47168711
Alignment:
Q  331 tgattttaccattttgcccctaggaggggca 361  Q
    |||||||||||||||||||||||||||||||    
T  47168681 tgattttaccattttgcccctaggaggggca 47168711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 9143506 - 9143563
Alignment:
Q  330 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||| ||||||||||||||||||  |||||||||| |||||  |||||||| ||||||    
T  9143506 ttgaatttaccattttgcccctataaggggcaatttggtaaattactaatttgttgag 9143563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 24684685 - 24684636
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||||||||||| |||  |||||||||| ||||||||||| |||||||    
T  24684685 tttaccattttgcctctataaggggcaatttggtaatctacttattggtt 24684636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 44804543 - 44804604
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||| |||| |||||||||||| |||||  |||||||||| ||||||||| | |||||||    
T  44804543 atgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggtt 44804604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 322 - 386
Target Start/End: Complemental strand, 12422409 - 12422345
Alignment:
Q  322 catgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttga 386  Q
    ||||||| |||||||||||||||||||||||  |||||||||| |||||||||||||||||||||    
T  12422409 catgtcctttgattttaccattttgcccctataaggggcaatttggtaatctactaattggttga 12422345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 30754432 - 30754496
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  30754432 atgtcctttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30754496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 36887032 - 36886968
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| |||| |||||    
T  36887032 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattgattgag 36886968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 386
Target Start/End: Complemental strand, 42977883 - 42977833
Alignment:
Q  336 ttaccattttgcccctaggaggggcaattgggtaatctactaattggttga 386  Q
    |||||||||||||||||  |||||||||| ||||||||||| |||||||||    
T  42977883 ttaccattttgcccctataaggggcaatttggtaatctacttattggttga 42977833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 6305501 - 6305452
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  6305501 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 6305452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 43138598 - 43138549
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  43138598 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 43138549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 3088095 - 3088031
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  || ||||||||||||    
T  3088095 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 3088031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 361
Target Start/End: Complemental strand, 34377107 - 34377078
Alignment:
Q  332 gattttaccattttgcccctaggaggggca 361  Q
    ||||||||||||||||||||||||||||||    
T  34377107 gattttaccattttgcccctaggaggggca 34377078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 25698781 - 25698717
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  || | ||||||||||    
T  25698781 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgag 25698717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 30140525 - 30140589
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  | ||| |||| |||||  |||||||||||||||    
T  30140525 atgtcctttgaatttaccattttgcccctattaagggtaatttggtaaattactaattggttgag 30140589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 11602230 - 11602164
Alignment:
Q  321 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    ||||||||||||||||||||||||||||||||  ||||||||||  |||||||| ||||||||||||    
T  11602230 ccatgtccgttgattttaccattttgcccctataaggggcaattcagtaatctattaattggttgag 11602164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 19369005 - 19368941
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||||||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  19369005 atgtcccttgattttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19368941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 28981883 - 28981817
Alignment:
Q  321 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||||| |||| ||||||||||||||||||  |||||||||| ||||||| ||||||||||||||    
T  28981883 ccatgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 28981817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 53800522 - 53800586
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||||||||||||||||||| |||||||||||||| |||||  ||| |||||||||||    
T  53800522 atgtccattgattttaccattttgcccttaggaggggcaatttggtaaattacaaattggttgag 53800586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 387
Target Start/End: Complemental strand, 26777912 - 26777850
Alignment:
Q  325 gtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||  ||| |||||||||||    
T  26777912 gtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 26777850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 40831992 - 40831926
Alignment:
Q  321 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||||| |||| ||||||||||||| ||||  |||| ||||| ||||||||||||||||||||||    
T  40831992 ccatgtcccttgaatttaccattttgctcctataagggacaattcggtaatctactaattggttgag 40831926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 29530625 - 29530561
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| |||||||||||| |||||  |||||||||| ||||||||||| ||||||||||    
T  29530625 atgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 29530561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 11955577 - 11955528
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  11955577 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 11955528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 380
Target Start/End: Complemental strand, 2847382 - 2847341
Alignment:
Q  339 ccattttgcccctaggaggggcaattgggtaatctactaatt 380  Q
    |||||||||||||| ||||||||||| |||||| ||||||||    
T  2847382 ccattttgcccctaagaggggcaatttggtaatttactaatt 2847341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 4139411 - 4139350
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||| ||||||||||||||||| |||||  |||||||||| |||||  ||| ||||||||    
T  4139411 atgtccattgattttaccattttgtccctattaggggcaatttggtaaattacaaattggtt 4139350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Original strand, 22473679 - 22473720
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctact 376  Q
    ||||||||||||||||||  |||||||||| |||||||||||    
T  22473679 tttaccattttgcccctataaggggcaatttggtaatctact 22473720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 35855239 - 35855288
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||| | |||||||    
T  35855239 tttaccattttgcccctataaggggcaatttggtaatctatttattggtt 35855288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 22519212 - 22519276
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  ||||||||||  ||||  || ||||||||||||    
T  22519212 atgtccattgaatttaccattttgcccctataaggggcaatttagtaaattattaattggttgag 22519276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 26102214 - 26102150
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  || || |||| |||||||| || ||||||||||    
T  26102214 atgtcctttgaatttaccattttgcccctataagaggtaatttggtaatctgcttattggttgag 26102150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 25529262 - 25529328
Alignment:
Q  321 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||||||||| |||||| ||||||| ||||  |||||||||| ||||||||||||||||||||||    
T  25529262 ccatgtccgttgcttttacgattttgctcctataaggggcaatttggtaatctactaattggttgag 25529328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 28573885 - 28573828
Alignment:
Q  330 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||| |||||||||||    
T  28573885 ttgattttaccattttgcccctaggaggggcaatttggtaaattacaaattggttgag 28573828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Original strand, 34316974 - 34317031
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaatt 380  Q
    |||||| ||||||||||| ||||||||||| ||||||||||| |||||| ||||||||    
T  34316974 atgtccattgattttacctttttgcccctaagaggggcaatttggtaatttactaatt 34317031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 4107977 - 4108041
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||||||||||||||| |||||| ||||||||||| |||||  ||| |||||||||||    
T  4107977 atgtccattgattttaccatttttcccctatgaggggcaatttggtaaattacaaattggttgag 4108041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 144 - 204
Target Start/End: Original strand, 31238497 - 31238557
Alignment:
Q  144 tattcctttctgtccacaacactcaaacacaacaaagccaaatttgctgcaaaaatgatcg 204  Q
    |||||||||| ||| ||||||| ||||||||||||||||| ||| ||| ||||||||||||    
T  31238497 tattcctttcagtcaacaacacccaaacacaacaaagccatattagctacaaaaatgatcg 31238557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 7557005 - 7556837
Alignment:
Q  26 cacataaaatgatcaaaaagaaaattaacattttcaactttcagccaccaatagatggaaaattttactttatccatgagcttcggaataaatttagctt 125  Q
    ||||| |||||| ||||| |||||  |||||||| | |||||| |||| || ||   |||| ||||||||| |||||||| | ||||||  | || ||||    
T  7557005 cacatgaaatgaccaaaaggaaaacgaacatttttatctttcaaccacaaaaaggaagaaacttttactttttccatgagttgcggaattgactttgctt 7556906  T
Q  126 tattgttatcgaacatattattcctttctgtccacaacactcaaacacaacaaagccaaatttgctgcaaaaa 198  Q
    ||||     ||| | ||||||||||||| ||||||||||  |||| |||||||||||||||| || |||||||    
T  7556905 tattc----cgagcctattattcctttcagtccacaacatccaaagacaacaaagccaaattagccgcaaaaa 7556837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 387
Target Start/End: Complemental strand, 33328343 - 33328277
Alignment:
Q  321 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||||| || | ||||||||||||| ||||  |||||||||| |||| |||||||||||||||||    
T  33328343 ccatgtcctttaaatttaccattttgctcctacaaggggcaatttggtagtctactaattggttgag 33328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 4897558 - 4897497
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||| | |||||||    
T  4897558 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggtt 4897497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 31247882 - 31247927
Alignment:
Q  159 acaacactcaaacacaacaaagccaaatttgctgcaaaaatgatcg 204  Q
    ||||||| ||||||||||||||||| ||| ||||||||||||||||    
T  31247882 acaacacccaaacacaacaaagccatattagctgcaaaaatgatcg 31247927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 9737816 - 9737752
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| |||||||||||| |||||  |||||||||| | ||||||| | ||||||||||    
T  9737816 atgtcccttgaatttaccattttgtccctataaggggcaatttgataatctatttattggttgag 9737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 62085 - 62149
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||  ||| |||||||||||    
T  62085 atgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 62149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 13171648 - 13171712
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  13171648 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 13171712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 50120021 - 50119957
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  50120021 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 50119957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 3757756 - 3757813
Alignment:
Q  330 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  3757756 ttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 3757813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 387
Target Start/End: Original strand, 17730463 - 17730520
Alignment:
Q  330 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||| ||||||||||||| ||||  |||||||||| ||||||||||||||||||||||    
T  17730463 ttgaatttaccattttgctcctataaggggcaatttggtaatctactaattggttgag 17730520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 30529335 - 30529278
Alignment:
Q  330 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  30529335 ttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30529278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 380
Target Start/End: Complemental strand, 35833477 - 35833420
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaatt 380  Q
    |||||| ||||||||||||||||||||||| ||||||||||| ||||||  |||||||    
T  35833477 atgtccattgattttaccattttgcccctatgaggggcaatttggtaattcactaatt 35833420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 3821262 - 3821198
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  |||||||||||||||    
T  3821262 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 3821198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 12682819 - 12682755
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| ||||||||||||||||||||||| ||||||||||| |||||  ||  |||||||||||    
T  12682819 atgtccattgattttaccattttgcccctatgaggggcaatttggtaaattataaattggttgag 12682755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 46104202 - 46104266
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| ||||||||||||||||||||| | ||||||||||| |||||  ||| |||||||||||    
T  46104202 atgtccattgattttaccattttgccccaatgaggggcaatttggtaaattacaaattggttgag 46104266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 46843129 - 46843078
Alignment:
Q  136 gaacatattattcctttctgtccacaacactcaaacacaacaaagccaaatt 187  Q
    |||||||||||||||||| || |||||||| ||||||||||| |||||||||    
T  46843129 gaacatattattcctttcagttcacaacacccaaacacaacatagccaaatt 46843078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 51347511 - 51347574
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttga 386  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||| | |||||||||    
T  51347511 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggttga 51347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 8956951 - 8957000
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  8956951 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8957000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 8986923 - 8986972
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  8986923 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8986972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 37349821 - 37349870
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  37349821 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 37349870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 53991603 - 53991554
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  53991603 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 53991554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 2116112 - 2116176
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| ||||||||||||||||| || |||||||||||||| |||||  ||  |||||||||||    
T  2116112 atgtccattgattttaccattttgtccttaggaggggcaatttggtaaattataaattggttgag 2116176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 24547354 - 24547418
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| |||||||||||| |||||  |||||||||| ||||||||| | ||||||||||    
T  24547354 atgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggttgag 24547418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 16896006 - 16896072
Alignment:
Q  321 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||||| |||| ||||| ||||||||| ||  |||||| ||| ||||||||| ||||||||||||    
T  16896006 ccatgtcccttgaatttacaattttgcccttataaggggctatttggtaatctattaattggttgag 16896072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 578656 - 578607
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||| ||||| ||||||||||| |||||||    
T  578656 tttaccattttgcccctataagggacaatttggtaatctacttattggtt 578607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 24948350 - 24948289
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||| |||| ||||||||||||| ||||  |||||||||| || |||||||| |||||||    
T  24948350 atgtcctttgaatttaccattttgctcctataaggggcaatttggaaatctacttattggtt 24948289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 29712405 - 29712454
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||| | |||||||    
T  29712405 tttaccattttgcccctataaggggcaatttggtaatctatttattggtt 29712454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 376
Target Start/End: Complemental strand, 35716350 - 35716309
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctact 376  Q
    ||||||||||||||||||  |||||||||| |||||||||||    
T  35716350 tttaccattttgcccctataaggggcaatttggtaatctact 35716309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 15704146 - 15704198
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    ||||||||||||||||||  ||||| |||| |||||  |||||||||||||||    
T  15704146 tttaccattttgcccctataaggggaaatttggtaaattactaattggttgag 15704198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 20588585 - 20588649
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| || ||||||||||| |||  |||||||||| ||||||| ||| ||||||||||    
T  20588585 atgtcccttgaattcaccattttgcctctataaggggcaatttggtaatccacttattggttgag 20588649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 387
Target Start/End: Complemental strand, 36743253 - 36743201
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||||||||| | |||  |||||||||| ||||||||||| ||||||||||    
T  36743253 tttaccattttgtctctataaggggcaatttggtaatctacttattggttgag 36743201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 39716781 - 39716717
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  || | ||||||||||    
T  39716781 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgag 39716717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 19486212 - 19486276
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  19486212 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19486276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 10876633 - 10876571
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  10876633 atgtcccttgaatttaccattttgccccta--aggggcaatttggtaatctacttattggttgag 10876571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 17836990 - 17837051
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  17836990 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 17837051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 32677247 - 32677186
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  32677247 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 32677186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 9920961 - 9920912
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  9920961 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 9920912  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 19486168 - 19486111
Alignment:
Q  330 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||| |||| |||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  19486168 ttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggttgag 19486111  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 10050253 - 10050189
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| | |||  |||||||||||||||    
T  10050253 atgtcctttgaatttaccattttgcccctattaggggcaatttgataaattactaattggttgag 10050189  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 28607244 - 28607308
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| |||||||||||| |||||  |||||||||| |||||  ||| |||||||||||    
T  28607244 atgtccattgaatttaccattttgtccctataaggggcaatttggtaaattacaaattggttgag 28607308  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 46626388 - 46626324
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| ||||||||||    
T  46626388 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 46626324  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 33075720 - 33075659
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  33075720 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 33075659  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 38894778 - 38894839
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||| |||| ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  38894778 atgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 38894839  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 5426239 - 5426303
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||||||||||||||||||| ||| |||||||||| |||||  ||| |||||||||||    
T  5426239 atgtccattgattttaccattttgcccttagaaggggcaatttggtaaattacaaattggttgag 5426303  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Complemental strand, 19322408 - 19322344
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||| |||||| ||||||||||    
T  19322408 atgtcccttgaatttaccattttgcccctataaggggcaatttggtattctacttattggttgag 19322344  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 47134727 - 47134791
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  |||||||||||||||    
T  47134727 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 47134791  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 19400752 - 19400818
Alignment:
Q  321 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||||| |||| ||||||||||||||| ||  ||||| |||| ||||||||| ||||||||||||    
T  19400752 ccatgtcccttgaatttaccattttgcccatataaggggtaattcggtaatctattaattggttgag 19400818  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 384
Target Start/End: Complemental strand, 22198971 - 22198910
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||| |||| |||| |||||||||||||  |||||||||| ||||||||||| |||||||    
T  22198971 atgtcccttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggtt 22198910  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 29844933 - 29844884
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  29844933 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29844884  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 16300412 - 16300476
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    |||||| |||| ||||||||||||| ||||  |||||||||| |||||  |||||||||||||||    
T  16300412 atgtcccttgaatttaccattttgctcctataaggggcaatttggtaaattactaattggttgag 16300476  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 387
Target Start/End: Original strand, 50557848 - 50557913
Alignment:
Q  321 ccatgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    ||||||||  ||| |||||||||||| || ||  |||||||||| ||||||||||||||||||||||    
T  50557848 ccatgtcccatgaatttaccattttgtcc-tataaggggcaatttggtaatctactaattggttgag 50557913  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 384
Target Start/End: Original strand, 10766221 - 10766270
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||| ||||| ||||||||||| |||||||    
T  10766221 tttaccattttgcccctataagggtcaatttggtaatctacttattggtt 10766270  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 371
Target Start/End: Original strand, 43116070 - 43116119
Alignment:
Q  322 catgtccgttgattttaccattttgcccctaggaggggcaattgggtaat 371  Q
    ||||||| |||| ||| | |||||||||||||||||||||||| ||||||    
T  43116070 catgtccattgaatttccaattttgcccctaggaggggcaatttggtaat 43116119  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 52306104 - 52306156
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggttgag 387  Q
    ||||||||||||||||||  |||||||||| | |||  |||||||||||||||    
T  52306104 tttaccattttgcccctataaggggcaatttgataaattactaattggttgag 52306156  T

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Target: scaffold0385 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 384
Target Start/End: Complemental strand, 8352 - 8303
Alignment:
Q  335 tttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    ||||||||||||||||||  |||||||||| ||||||||||| |||||||    
T  8352 tttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8303  T

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Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 225458 - 225519
Alignment:
Q  323 atgtccgttgattttaccattttgcccctaggaggggcaattgggtaatctactaattggtt 384  Q
    |||||| |||| ||||||||||||||||||  |||||||||| |||||  ||||||||||||    
T  225458 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 225519  T

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Target: scaffold0429 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 330 - 380
Target Start/End: Original strand, 12991 - 13040
Alignment:
Q  330 ttgattttaccattttgcccctaggaggggcaattgggtaatctactaatt 380  Q
    ||||||||||| ||||||||||| ||||||||||| |||||| ||||||||    
T  12991 ttgattttacc-ttttgcccctaagaggggcaatttggtaatttactaatt 13040  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 361
Target Start/End: Complemental strand, 23529 - 23500
Alignment:
Q  332 gattttaccattttgcccctaggaggggca 361  Q
    ||||||||||||||||||||||||||||||    
T  23529 gattttaccattttgcccctaggaggggca 23500  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 359
Target Start/End: Complemental strand, 18933 - 18896
Alignment:
Q  322 catgtccgttgattttaccattttgcccctaggagggg 359  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  18933 catgtccattgattttatcattttgcccctaggagggg 18896  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 332 - 361
Target Start/End: Original strand, 353549 - 353578
Alignment:
Q  332 gattttaccattttgcccctaggaggggca 361  Q
    ||||||||||||||||||||||||||||||    
T  353549 gattttaccattttgcccctaggaggggca 353578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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