View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10960_high_15 (Length: 243)
Name: NF10960_high_15
Description: NF10960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10960_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 6554766 - 6554532
Alignment:
| Q |
1 |
cattatcagtttctgagtctaacctgataggatggtacaatcaatctgggactagtcatgttgatgaatgcatatccaacattgcatttgttctgcaatc |
100 |
Q |
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| T |
6554766 |
cattatcattttctgagtctaacctgatagaatggtacaatcaagctgggactagtcatgttgatgaatgcatatccaacattgcatttgttctgcaatc |
6554667 |
T |
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| Q |
101 |
aatgttgattccatgtgaataattaactaaaataaaaagaatgccaaaataaattaaacataggaagagaaaagcacttactctgaaatcaattggtaga |
200 |
Q |
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| T |
6554666 |
aatgttgattccatgtgaataattaactaaaataaaaagaatgccaaaataaattaaacataggaagagaaaagcacttactctgaaatcaattggtaga |
6554567 |
T |
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| Q |
201 |
tacacaaaatcataagctcctttatgatgtccatc |
235 |
Q |
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| T |
6554566 |
tacacaaaatcataagctcctttatggtgttcatc |
6554532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 49057805 - 49058014
Alignment:
| Q |
19 |
ctaacctgataggatggtacaatcaatctgggactagtcatgttgatgaatgcatatccaacattgcatttgttctgcaatcaatgttgattccatgtga |
118 |
Q |
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| T |
49057805 |
ctaacctcatagaaaggtataatcaagctaggactagtcatgttgatgaatgcatatccagcattgcatttgttctgcaatcaatgttgattcaatgtta |
49057904 |
T |
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| Q |
119 |
ataattaacta--aaataaaaagaatgccaaaataaattaaacataggaaga----------gaaaagcacttactctgaaatcaattggtagatacaca |
206 |
Q |
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| T |
49057905 |
ataattaagaaacaaataaaaggagttccaaaataaattaaacatttaaagataaaaaagataaaaaacacgtactctgaaatcaattggtagatacaca |
49058004 |
T |
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| Q |
207 |
aaatcataag |
216 |
Q |
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| T |
49058005 |
aagtcataag |
49058014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 98
Target Start/End: Original strand, 40158350 - 40158384
Alignment:
| Q |
64 |
atgaatgcatatccaacattgcatttgttctgcaa |
98 |
Q |
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| T |
40158350 |
atgaatgcatatccaacattacatttgttctgcaa |
40158384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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