View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10960_high_2 (Length: 559)
Name: NF10960_high_2
Description: NF10960
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10960_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 235
Target Start/End: Complemental strand, 32142926 - 32142711
Alignment:
| Q |
18 |
cttctttcattacaaactccctaaacctcttaattccttcagaatatcttcttccccactagatccactttttcccttcacccttccacttccaagcata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| | |
|
|
| T |
32142926 |
cttctttcattacaaactccctaaacctcttaattccttcagaatatcttcttccccactagatccactttttccttcaacccttccacttccaagcaga |
32142827 |
T |
|
| Q |
118 |
attctatctacaccccctcaacacatttctctatacaccccctcaaaaaaccaaccttgttcgtcttccaatccttcatgcaaacaaaaactctttcttt |
217 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32142826 |
attctatctacacccc--caacacatttctctatacaccccctcaaaaaaccaaccttgttcctcttccaatccttcatgcaaacaaaaactctttcttt |
32142729 |
T |
|
| Q |
218 |
ttactctctcacttcact |
235 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
32142728 |
ttactctctcacttcact |
32142711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 294 - 454
Target Start/End: Complemental strand, 32142652 - 32142492
Alignment:
| Q |
294 |
tcactatctttaccatgtctttgcagaagctgaagctatcaacaccaagttcaatttttgaagaaaactcatcaaccaaaacaaagagaaaacccaaaag |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
32142652 |
tcactatctttaccatgtctttgcagaagctgaagctatcaacaccaagttcaatttttgaagaaaacccatcaaccaaaacaaagagaaaacccaaaag |
32142553 |
T |
|
| Q |
394 |
aaagcttgttcgaatcataatcaccgaccacgacgccactgattccgactcctccggcgac |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32142552 |
aaagcttgttcgaatcataatcaccgaccacgacgccactgattccgactcctccggcgac |
32142492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 510 - 555
Target Start/End: Complemental strand, 32142436 - 32142391
Alignment:
| Q |
510 |
tccttcatattaacatgcactgtcccgtaccaaattcttctctctc |
555 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32142436 |
tccttcatattaacatgcactgtcccgtaccaaattcttctctctc |
32142391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University